1     M         1.843   1.870   1.920   2.149   2.188   2.281   2.054   2.090   2.173
2     T         0.434   0.512   0.488   0.255   0.395   0.338   0.194   0.327   0.263
3     I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
4     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
5     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
6     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
7     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
8     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
9     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
10    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
11    Q        -0.588  -0.563  -0.494  -0.789  -0.723  -0.637  -0.736  -0.695  -0.600
12    A         0.434   0.417   0.459   0.180   0.158   0.220   0.194   0.156   0.210
13    K        -0.588  -0.563  -0.494  -0.815  -0.779  -0.663  -0.736  -0.695  -0.600
14    P        -1.225  -1.202  -1.126  -0.891  -0.852  -0.739  -1.085  -1.046  -0.946
15    S        -1.105  -1.053  -1.048  -1.107  -1.035  -1.025  -0.960  -0.892  -0.866
16    S        -1.105  -0.960  -1.070  -1.101  -0.851  -1.059  -0.960  -0.785  -0.890
17    S        -1.718  -1.679  -1.616  -1.746  -1.677  -1.588  -1.295  -1.242  -1.154
18    I        -1.105  -1.130  -1.092  -1.056  -1.100  -1.044  -0.960  -0.975  -0.912
19    S        -1.105  -1.130  -1.092  -1.200  -1.254  -1.191  -0.960  -0.975  -0.912
20    Y        -0.260  -0.382  -0.408  -0.163  -0.371  -0.441  -0.290  -0.451  -0.486
21    D         0.736   0.837   0.626   0.685   0.822   0.526   0.715   0.875   0.511
22    S        -1.105  -1.131  -1.088  -1.194  -1.239  -1.183  -0.960  -0.977  -0.909
23    T        -0.260  -0.261  -0.347  -0.228  -0.241  -0.387  -0.290  -0.292  -0.402
24    T        -1.225  -1.179  -1.126  -1.365  -1.297  -1.209  -1.085  -1.023  -0.946
25    Y         0.598   0.482   0.482   0.655   0.446   0.429   0.484   0.273   0.251
26    G        -1.225  -1.179  -1.126  -1.374  -1.269  -1.218  -1.085  -1.023  -0.946
27    T        -1.225  -1.179  -1.126  -1.294  -1.210  -1.138  -1.085  -1.023  -0.946
28    A        -1.105  -1.066  -1.051  -1.161  -1.110  -1.082  -0.960  -0.906  -0.870
29    P         0.736   0.821   0.625   1.068   1.204   0.893   0.715   0.850   0.510
30    G         0.354   0.337   0.399   0.082   0.049   0.141   0.045   0.006   0.097
31    L        -0.491  -0.411  -0.451  -0.647  -0.511  -0.562  -0.625  -0.518  -0.548
32    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
33    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
34    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
35    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
36    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
37    D        -0.260  -0.261  -0.347  -0.228  -0.246  -0.390  -0.290  -0.292  -0.402
38    I        -1.105  -1.130  -1.092  -0.962  -0.997  -0.935  -0.960  -0.975  -0.912
39    K        -0.491  -0.411  -0.451  -0.781  -0.632  -0.703  -0.625  -0.518  -0.548
40    E         0.354   0.373   0.411   0.106   0.125   0.181   0.045   0.073   0.119
41    F        -0.260  -0.261  -0.347  -0.094  -0.110  -0.258  -0.290  -0.292  -0.402
42    Q        -1.105  -1.130  -1.092  -0.985  -1.070  -1.005  -0.960  -0.975  -0.912
43    I        -0.458  -0.474  -0.455  -0.463  -0.502  -0.457  -0.562  -0.583  -0.549
44    I        -1.225  -1.179  -1.126  -1.302  -1.223  -1.146  -1.085  -1.023  -0.946
45    E         1.843   1.870   1.920   1.773   1.805   1.907   2.054   2.090   2.173
46    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
47    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
48    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
49    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
50    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
51    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
52    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
53    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
54    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
55    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
56    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
57    D         0.354   0.337   0.399   0.173   0.111   0.231   0.045   0.006   0.097
58    W        -0.260  -0.382  -0.408   0.044  -0.177  -0.253  -0.290  -0.451  -0.486
59    N        -0.260  -0.122  -0.301  -0.183   0.008  -0.245  -0.290  -0.095  -0.340
60    G        -0.491  -0.502  -0.437  -0.700  -0.724  -0.607  -0.625  -0.622  -0.530
61    R        -0.260  -0.382  -0.408  -0.082  -0.280  -0.357  -0.290  -0.451  -0.486
62    P        -0.260  -0.382  -0.408   0.067  -0.124  -0.206  -0.290  -0.451  -0.486
63    A         0.736   0.650   0.583   0.819   0.698   0.582   0.715   0.568   0.435
64    S         0.736   0.650   0.583   0.741   0.608   0.503   0.715   0.568   0.435
65    A        -0.260  -0.242  -0.328  -0.316  -0.301  -0.420  -0.290  -0.264  -0.377
66    W         1.843   1.870   1.920   2.168   2.213   2.299   2.054   2.090   2.173
67    S         0.354   0.337   0.399   0.112   0.080   0.181   0.045   0.006   0.097
68    V         0.354   0.337   0.399   0.158   0.105   0.202   0.045   0.006   0.097
69    Q        -0.491  -0.515  -0.444  -0.527  -0.554  -0.451  -0.625  -0.637  -0.539
70    R         0.354   0.337   0.399   0.200   0.141   0.229   0.045   0.006   0.097
71    I         0.736   0.650   0.583   0.861   0.749   0.642   0.715   0.568   0.435
72    G         1.843   1.870   1.920   1.829   1.885   1.963   2.054   2.090   2.173
73    L        -1.105  -0.960  -1.070  -1.001  -0.766  -0.946  -0.960  -0.785  -0.890
74    L         1.843   1.870   1.920   1.784   1.815   1.918   2.054   2.090   2.173
75    Q         1.843   1.870   1.920   2.069   2.111   2.201   2.054   2.090   2.173
76    S        -1.105  -1.139  -1.096  -1.032  -1.052  -1.001  -0.960  -0.984  -0.917
77    K         0.736   0.677   0.595   0.696   0.630   0.505   0.715   0.613   0.457
78    I        -0.491  -0.420  -0.451  -0.642  -0.541  -0.567  -0.625  -0.526  -0.549
79    E         1.843   1.870   1.920   1.751   1.784   1.886   2.054   2.090   2.173
80    R        -1.105  -1.139  -1.096  -0.939  -1.017  -0.946  -0.960  -0.984  -0.917
81    Y        -0.260  -0.382  -0.408  -0.040  -0.207  -0.258  -0.290  -0.451  -0.486
82    T         0.354   0.337   0.399   0.283   0.265   0.366   0.045   0.006   0.097
83    Y         0.598   0.482   0.482   0.754   0.589   0.584   0.484   0.273   0.251
84    N        -1.105  -1.064  -1.050  -0.975  -0.949  -0.884  -0.960  -0.905  -0.869
85    I        -0.260  -0.382  -0.408  -0.137  -0.314  -0.370  -0.290  -0.451  -0.486
86    Y        -0.260  -0.382  -0.408  -0.169  -0.368  -0.450  -0.290  -0.451  -0.486
87    H        -0.260  -0.382  -0.408   0.054  -0.149  -0.225  -0.290  -0.451  -0.486
88    N        -0.260  -0.263  -0.342  -0.222  -0.226  -0.342  -0.290  -0.295  -0.395
89    N        -0.260  -0.382  -0.408  -0.199  -0.405  -0.443  -0.290  -0.451  -0.486
90    K        -0.491  -0.517  -0.439  -0.635  -0.649  -0.530  -0.625  -0.640  -0.534
91    Y         0.354   0.337   0.399   0.308   0.284   0.378   0.045   0.006   0.097
92    G         0.736   0.677   0.595   0.741   0.666   0.517   0.715   0.613   0.457
93    K        -0.260  -0.382  -0.408  -0.382  -0.565  -0.635  -0.290  -0.451  -0.486
94    H        -0.260  -0.382  -0.408   0.067  -0.130  -0.206  -0.290  -0.451  -0.486
95    N         0.736   0.650   0.583   0.800   0.652   0.564   0.715   0.568   0.435
96    L        -0.260  -0.382  -0.408  -0.252  -0.455  -0.473  -0.290  -0.451  -0.486
97    S        -1.105  -1.139  -1.096  -1.134  -1.190  -1.120  -0.960  -0.984  -0.917
98    K        -1.105  -1.139  -1.096  -1.175  -1.225  -1.145  -0.960  -0.984  -0.917
99    L        -0.260  -0.382  -0.408  -0.346  -0.566  -0.612  -0.290  -0.451  -0.486
100   I         0.354   0.337   0.399   0.260   0.239   0.336   0.045   0.006   0.097
101   P         0.354   0.337   0.399   0.353   0.290   0.381   0.045   0.006   0.097
102   G        -0.491  -0.504  -0.437  -0.567  -0.563  -0.466  -0.625  -0.625  -0.531
103   H        -0.260  -0.382  -0.408   0.022  -0.197  -0.273  -0.290  -0.451  -0.486
104   A        -0.260  -0.263  -0.342  -0.139  -0.132  -0.278  -0.290  -0.295  -0.395
105   L         0.736   0.677   0.595   0.717   0.624   0.506   0.715   0.613   0.457
106   I        -1.105  -1.130  -1.092  -0.947  -0.962  -0.917  -0.960  -0.975  -0.912
107   Q        -1.105  -0.960  -1.070  -1.053  -0.838  -1.000  -0.960  -0.785  -0.890
108   F         0.354   0.337   0.399   0.229   0.159   0.265   0.045   0.006   0.097
109   A         1.843   1.870   1.920   1.887   1.933   2.020   2.054   2.090   2.173
110   N         1.843   1.870   1.920   1.868   1.889   2.001   2.054   2.090   2.173
111   E         1.843   1.870   1.920   1.751   1.784   1.886   2.054   2.090   2.173
112   T        -0.260  -0.125  -0.309  -0.043   0.171  -0.104  -0.290  -0.098  -0.351
113   F         1.843   1.870   1.920   2.020   2.063   2.152   2.054   2.090   2.173
114   G         1.843   1.870   1.920   1.829   1.885   1.963   2.054   2.090   2.173
115   Y         0.354   0.365   0.405   0.308   0.334   0.388   0.045   0.059   0.108
116   D         0.736   0.677   0.595   0.823   0.727   0.603   0.715   0.613   0.457
117   G         1.843   1.870   1.920   1.829   1.885   1.963   2.054   2.090   2.173
118   W         1.843   1.870   1.920   2.168   2.213   2.299   2.054   2.090   2.173
119   R        -0.260  -0.109  -0.317  -0.265  -0.025  -0.357  -0.290  -0.076  -0.361
120   M        -0.491  -0.429  -0.430  -0.547  -0.465  -0.429  -0.625  -0.545  -0.525
121   D        -0.491  -0.515  -0.444  -0.682  -0.722  -0.601  -0.625  -0.637  -0.539
122   V         0.354   0.424   0.450   0.213   0.352   0.373   0.045   0.168   0.192
123   I        -0.491  -0.516  -0.438  -0.721  -0.757  -0.624  -0.625  -0.639  -0.533
124   D        -1.105  -1.051  -1.042  -1.080  -1.006  -0.986  -0.960  -0.890  -0.860
125   V        -1.105  -1.139  -1.096  -0.914  -0.937  -0.895  -0.960  -0.984  -0.917
126   E        -1.105  -1.139  -1.096  -1.069  -1.112  -1.026  -0.960  -0.984  -0.917
127   A        -1.105  -0.960  -1.070  -1.175  -0.949  -1.121  -0.960  -0.785  -0.890
128   R        -1.718  -1.679  -1.616  -1.656  -1.568  -1.498  -1.295  -1.242  -1.154
129   E        -1.105  -1.130  -1.092  -1.123  -1.155  -1.084  -0.960  -0.975  -0.912
130   C        -1.225  -1.200  -1.126  -1.100  -1.058  -0.946  -1.085  -1.044  -0.946
131   Q        -0.458  -0.434  -0.410  -0.372  -0.345  -0.308  -0.562  -0.524  -0.489
132   P         0.434   0.377   0.432   0.532   0.401   0.482   0.194   0.081   0.159
133   F        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
134   T        -0.588  -0.566  -0.494  -0.682  -0.634  -0.531  -0.736  -0.699  -0.600
135   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
136   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
137   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
138   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
139   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
140   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
141   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
142   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
143   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
144   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
145   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
146   V        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
147   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
148   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
149   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
150   E        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
151   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
152   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
153   N         0.598   0.672   0.576   0.485   0.597   0.443   0.484   0.605   0.423
154   T        -1.225  -1.200  -1.126  -1.391  -1.355  -1.235  -1.085  -1.044  -0.946
155   S        -1.225  -1.200  -1.126  -1.431  -1.395  -1.274  -1.085  -1.044  -0.946
156   E        -1.105  -1.051  -1.042  -1.126  -1.067  -1.021  -0.960  -0.890  -0.860
157   V        -1.105  -0.960  -1.070  -1.107  -0.887  -1.060  -0.960  -0.785  -0.890
158   K        -1.105  -1.051  -1.042  -1.222  -1.146  -1.122  -0.960  -0.890  -0.860
159   Y         0.736   0.821   0.625   0.947   1.079   0.808   0.715   0.850   0.510
160   T         0.354   0.337   0.399   0.138   0.094   0.190   0.045   0.006   0.097
161   V         0.736   0.650   0.583   0.866   0.753   0.625   0.715   0.568   0.435
162   V        -1.105  -1.042  -1.047  -1.186  -1.098  -1.096  -0.960  -0.880  -0.865
163   A        -0.260  -0.382  -0.408  -0.071  -0.229  -0.265  -0.290  -0.451  -0.486
164   E        -0.260  -0.382  -0.408  -0.310  -0.509  -0.540  -0.290  -0.451  -0.486
165   A         0.354   0.337   0.399   0.202   0.179   0.270   0.045   0.006   0.097
166   Q        -1.718  -1.679  -1.616  -1.547  -1.493  -1.390  -1.295  -1.242  -1.154
167   V        -0.260  -0.382  -0.408  -0.139  -0.320  -0.395  -0.290  -0.451  -0.486
168   K         0.354   0.337   0.399   0.117   0.115   0.212   0.045   0.006   0.097
169   V        -0.491  -0.502  -0.437  -0.628  -0.640  -0.539  -0.625  -0.622  -0.530
170   T        -0.491  -0.420  -0.451  -0.565  -0.437  -0.488  -0.625  -0.526  -0.549
171   L         1.843   1.870   1.920   1.784   1.815   1.918   2.054   2.090   2.173
172   K         1.843   1.870   1.920   1.732   1.786   1.866   2.054   2.090   2.173
173   D         1.843   1.870   1.920   1.900   1.938   2.033   2.054   2.090   2.173
174   G         0.736   0.821   0.625   0.762   0.901   0.599   0.715   0.850   0.510
175   T         1.843   1.870   1.920   1.894   1.942   2.027   2.054   2.090   2.173
176   N        -0.491  -0.515  -0.444  -0.514  -0.533  -0.414  -0.625  -0.637  -0.539
177   T        -0.260  -0.382  -0.408  -0.149  -0.338  -0.384  -0.290  -0.451  -0.486
178   Q        -1.718  -1.679  -1.616  -1.456  -1.438  -1.299  -1.295  -1.242  -1.154
179   C        -1.718  -1.679  -1.616  -1.311  -1.282  -1.156  -1.295  -1.242  -1.154
180   G        -1.105  -1.130  -1.092  -1.180  -1.230  -1.172  -0.960  -0.975  -0.912
181   G         1.843   1.870   1.920   1.829   1.885   1.963   2.054   2.090   2.173
182   L        -1.105  -1.131  -1.088  -0.916  -0.952  -0.905  -0.960  -0.977  -0.909
183   G        -0.260  -0.261  -0.347  -0.269  -0.258  -0.417  -0.290  -0.292  -0.402
184   R        -0.491  -0.420  -0.451  -0.651  -0.560  -0.604  -0.625  -0.526  -0.549
185   I        -0.491  -0.429  -0.427  -0.642  -0.547  -0.533  -0.625  -0.545  -0.522
186   T         0.736   0.677   0.595   0.804   0.722   0.578   0.715   0.613   0.457
187   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
188   L        -0.260  -0.109  -0.317   0.026   0.266  -0.091  -0.290  -0.076  -0.361
189   S         0.736   0.837   0.626   1.050   1.210   0.868   0.715   0.875   0.511
190   S        -1.105  -1.139  -1.096  -0.929  -0.951  -0.880  -0.960  -0.984  -0.917
191   R         0.736   0.837   0.626   0.696   0.852   0.552   0.715   0.875   0.511
192   G        -1.105  -1.130  -1.092  -1.003  -1.017  -0.965  -0.960  -0.975  -0.912
193   E         0.354   0.337   0.399   0.211   0.200   0.319   0.045   0.006   0.097
194   C        -0.260  -0.122  -0.301   0.078   0.305  -0.011  -0.290  -0.095  -0.340
195   Y         0.354   0.426   0.449   0.308   0.440   0.466   0.045   0.170   0.192
196   N         0.354   0.361   0.405   0.156   0.148   0.231   0.045   0.051   0.108
197   R        -0.260  -0.263  -0.342  -0.318  -0.324  -0.437  -0.290  -0.295  -0.395
198   S        -0.260  -0.242  -0.328  -0.232  -0.199  -0.357  -0.290  -0.264  -0.377
199   K         0.736   0.650   0.583   0.696   0.591   0.486   0.715   0.568   0.435
200   K         1.843   1.870   1.920   1.732   1.786   1.866   2.054   2.090   2.173
201   E        -0.260  -0.382  -0.408  -0.310  -0.506  -0.540  -0.290  -0.451  -0.486
202   A         1.843   1.870   1.920   1.887   1.933   2.020   2.054   2.090   2.173
203   V         0.354   0.369   0.413   0.224   0.262   0.311   0.045   0.066   0.122
204   G        -0.260  -0.109  -0.317  -0.210   0.033  -0.311  -0.290  -0.076  -0.361
205   D         1.843   1.870   1.920   1.900   1.938   2.033   2.054   2.090   2.173
206   A         0.736   0.677   0.595   0.801   0.721   0.576   0.715   0.613   0.457
207   L         0.736   0.650   0.583   0.717   0.583   0.486   0.715   0.568   0.435
208   K         1.843   1.870   1.920   1.732   1.786   1.866   2.054   2.090   2.173
209   K         0.354   0.432   0.451   0.067   0.207   0.235   0.045   0.182   0.195
210   A        -0.260  -0.255  -0.333  -0.114  -0.116  -0.214  -0.290  -0.281  -0.384
211   L         0.354   0.337   0.399   0.091   0.057   0.166   0.045   0.006   0.097
212   L         0.736   0.650   0.583   0.727   0.597   0.501   0.715   0.568   0.435
213   S         0.354   0.432   0.451   0.082   0.240   0.248   0.045   0.182   0.195
214   F         0.354   0.337   0.399   0.229   0.159   0.265   0.045   0.006   0.097
215   E         0.354   0.337   0.399   0.134   0.113   0.227   0.045   0.006   0.097
216   K         0.354   0.337   0.399   0.046   0.026   0.126   0.045   0.006   0.097
217   I        -0.491  -0.420  -0.451  -0.642  -0.541  -0.567  -0.625  -0.526  -0.549
218   I        -0.260  -0.382  -0.408  -0.189  -0.382  -0.447  -0.290  -0.451  -0.486
219   L         1.843   1.870   1.920   1.784   1.815   1.918   2.054   2.090   2.173
220   D         0.354   0.424   0.450   0.063   0.173   0.224   0.045   0.168   0.192
221   Y        -0.491  -0.504  -0.433  -0.375  -0.399  -0.293  -0.625  -0.624  -0.526
222   E         1.843   1.870   1.920   1.751   1.784   1.886   2.054   2.090   2.173
223   T        -1.105  -1.066  -1.051  -1.061  -0.993  -0.969  -0.960  -0.906  -0.870
224   K         0.736   0.650   0.583   0.628   0.503   0.376   0.715   0.568   0.435
225   I        -1.105  -1.130  -1.092  -0.980  -1.013  -0.956  -0.960  -0.975  -0.912
226   T        -1.105  -1.131  -1.088  -1.175  -1.206  -1.135  -0.960  -0.977  -0.909
227   N        -1.105  -1.139  -1.096  -0.947  -1.015  -0.915  -0.960  -0.984  -0.917
228   N        -1.105  -1.130  -1.092  -1.080  -1.140  -1.064  -0.960  -0.975  -0.912
229   Y        -0.458  -0.474  -0.455  -0.317  -0.335  -0.304  -0.562  -0.583  -0.549
230   Y         0.598   0.482   0.482   0.717   0.537   0.527   0.484   0.273   0.251
231   V         1.843   1.870   1.920   1.886   1.929   2.019   2.054   2.090   2.173
232   D         1.843   1.870   1.920   1.933   1.976   2.066   2.054   2.090   2.173
233   G         1.843   1.870   1.920   1.750   1.795   1.884   2.054   2.090   2.173
234   L         0.434   0.438   0.432   0.331   0.334   0.305   0.194   0.193   0.159
235   Y         0.434   0.438   0.432   0.435   0.441   0.425   0.194   0.193   0.159
236   G         0.434   0.438   0.432   0.115   0.115   0.078   0.194   0.193   0.159
237   S        -0.491  -0.502  -0.437  -0.628  -0.618  -0.520  -0.625  -0.622  -0.530
238   K        -0.491  -0.515  -0.444  -0.710  -0.707  -0.593  -0.625  -0.637  -0.539
239   K        -1.718  -1.679  -1.616  -1.538  -1.481  -1.380  -1.295  -1.242  -1.154
240   I        -1.718  -1.679  -1.616  -1.550  -1.477  -1.393  -1.295  -1.242  -1.154
241   K         0.736   0.650   0.583   0.665   0.551   0.436   0.715   0.568   0.435
242   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
243   E        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
244   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
245   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
246   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
247   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
248   Y        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
249   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
250   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
251   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
252   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
253   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
254   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
255   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
256   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
257   K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
258   P        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
259   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
260   F        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
261   I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
262   K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
263   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
264   E        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
265   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
266   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
267   K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
268   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
269   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
270   H        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
271   I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
272   K        -1.105  -1.053  -1.048  -1.056  -0.957  -0.971  -0.960  -0.892  -0.866
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/Q12223
Output conservation file - output/Q12223
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
