1     M         1.558   1.558   1.558   1.877   1.877   1.877   1.558   1.558   1.558
2     D        -0.638  -0.638  -0.638  -0.784  -0.784  -0.784  -0.638  -0.638  -0.638
3     L        -0.638  -0.638  -0.638  -0.856  -0.856  -0.856  -0.638  -0.638  -0.638
4     P        -0.638  -0.638  -0.638  -0.239  -0.239  -0.239  -0.638  -0.638  -0.638
5     K        -0.638  -0.638  -0.638  -0.618  -0.618  -0.618  -0.638  -0.638  -0.638
6     D        -0.638  -0.638  -0.638  -0.618  -0.618  -0.618  -0.638  -0.638  -0.638
7     K        -0.638  -0.638  -0.638  -0.856  -0.856  -0.856  -0.638  -0.638  -0.638
8     S        -0.638  -0.638  -0.638  -0.972  -0.972  -0.972  -0.638  -0.638  -0.638
9     D        -0.638  -0.638  -0.638  -0.841  -0.841  -0.841  -0.638  -0.638  -0.638
10    R         1.558   1.558   1.558   1.698   1.698   1.698   1.558   1.558   1.558
11    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
12    T         1.558   1.558   1.558   1.588   1.588   1.588   1.558   1.558   1.558
13    H        -0.638  -0.638  -0.638  -0.418  -0.418  -0.418  -0.638  -0.638  -0.638
14    Q        -0.638  -0.638  -0.638  -0.524  -0.524  -0.524  -0.638  -0.638  -0.638
15    R        -0.638  -0.638  -0.638  -0.432  -0.432  -0.432  -0.638  -0.638  -0.638
16    I        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
17    N         1.558   1.558   1.558   1.606   1.606   1.606   1.558   1.558   1.558
18    L        -0.638  -0.638  -0.638  -1.031  -1.031  -1.031  -0.638  -0.638  -0.638
19    N        -0.638  -0.638  -0.638  -0.605  -0.605  -0.605  -0.638  -0.638  -0.638
20    N        -0.638  -0.638  -0.638  -0.564  -0.564  -0.564  -0.638  -0.638  -0.638
21    S        -0.638  -0.638  -0.638  -0.972  -0.972  -0.972  -0.638  -0.638  -0.638
22    G        -0.638  -0.638  -0.638  -0.728  -0.728  -0.728  -0.638  -0.638  -0.638
23    T        -0.638  -0.638  -0.638  -0.328  -0.328  -0.328  -0.638  -0.638  -0.638
24    D         1.558   1.558   1.558   1.532   1.532   1.532   1.558   1.558   1.558
25    R        -0.638  -0.638  -0.638  -0.497  -0.497  -0.497  -0.638  -0.638  -0.638
26    T        -0.638  -0.638  -0.638  -0.578  -0.578  -0.578  -0.638  -0.638  -0.638
27    N        -0.638  -0.638  -0.638  -0.618  -0.618  -0.618  -0.638  -0.638  -0.638
28    D        -0.638  -0.638  -0.638  -0.380  -0.380  -0.380  -0.638  -0.638  -0.638
29    L        -0.638  -0.638  -0.638  -0.714  -0.714  -0.714  -0.638  -0.638  -0.638
30    Y        -0.638  -0.638  -0.638  -0.551  -0.551  -0.551  -0.638  -0.638  -0.638
31    L        -0.638  -0.638  -0.638  -0.578  -0.578  -0.578  -0.638  -0.638  -0.638
32    H        -0.638  -0.638  -0.638  -0.418  -0.418  -0.418  -0.638  -0.638  -0.638
33    I         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
34    V        -0.638  -0.638  -0.638  -0.354  -0.354  -0.354  -0.638  -0.638  -0.638
35    Q        -0.638  -0.638  -0.638  -0.564  -0.564  -0.564  -0.638  -0.638  -0.638
36    T        -0.638  -0.638  -0.638  -0.742  -0.742  -0.742  -0.638  -0.638  -0.638
37    F        -0.638  -0.638  -0.638  -0.277  -0.277  -0.277  -0.638  -0.638  -0.638
38    G        -0.638  -0.638  -0.638  -0.497  -0.497  -0.497  -0.638  -0.638  -0.638
39    C        -0.638  -0.638  -0.638  -0.341  -0.341  -0.341  -0.638  -0.638  -0.638
40    I        -0.638  -0.638  -0.638  -0.972  -0.972  -0.972  -0.638  -0.638  -0.638
41    E        -0.638  -0.638  -0.638  -0.714  -0.714  -0.714  -0.638  -0.638  -0.638
42    T        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
43    T        -0.638  -0.638  -0.638  -0.632  -0.632  -0.632  -0.638  -0.638  -0.638
44    A        -0.638  -0.638  -0.638  -0.418  -0.418  -0.418  -0.638  -0.638  -0.638
45    T        -0.638  -0.638  -0.638  -0.742  -0.742  -0.742  -0.638  -0.638  -0.638
46    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
47    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
48    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
49    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
50    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
51    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
52    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
53    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
54    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
55    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
56    E         1.558   1.558   1.558   1.457   1.457   1.457   1.558   1.558   1.558
57    N        -0.638  -0.638  -0.638  -0.605  -0.605  -0.605  -0.638  -0.638  -0.638
58    A        -0.638  -0.638  -0.638  -0.418  -0.418  -0.418  -0.638  -0.638  -0.638
59    T        -0.638  -0.638  -0.638  -0.564  -0.564  -0.564  -0.638  -0.638  -0.638
60    K        -0.638  -0.638  -0.638  -0.551  -0.551  -0.551  -0.638  -0.638  -0.638
61    L        -0.638  -0.638  -0.638  -1.031  -1.031  -1.031  -0.638  -0.638  -0.638
62    L         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
63    M        -0.638  -0.638  -0.638  -0.139  -0.139  -0.139  -0.638  -0.638  -0.638
64    L        -0.638  -0.638  -0.638  -1.031  -1.031  -1.031  -0.638  -0.638  -0.638
65    G         1.558   1.558   1.558   1.680   1.680   1.680   1.558   1.558   1.558
66    D        -0.638  -0.638  -0.638  -0.605  -0.605  -0.605  -0.638  -0.638  -0.638
67    V        -0.638  -0.638  -0.638  -0.673  -0.673  -0.673  -0.638  -0.638  -0.638
68    E        -0.638  -0.638  -0.638  -0.673  -0.673  -0.673  -0.638  -0.638  -0.638
69    V        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
70    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
71    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
72    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
73    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
74    E         1.558   1.558   1.558   1.457   1.457   1.457   1.558   1.558   1.558
75    I        -0.638  -0.638  -0.638  -0.551  -0.551  -0.551  -0.638  -0.638  -0.638
76    S        -0.638  -0.638  -0.638  -0.632  -0.632  -0.632  -0.638  -0.638  -0.638
77    A        -0.638  -0.638  -0.638  -0.537  -0.537  -0.537  -0.638  -0.638  -0.638
78    S         1.558   1.558   1.558   1.362   1.362   1.362   1.558   1.558   1.558
79    S        -0.638  -0.638  -0.638  -0.742  -0.742  -0.742  -0.638  -0.638  -0.638
80    V        -0.638  -0.638  -0.638  -0.328  -0.328  -0.328  -0.638  -0.638  -0.638
81    S         1.558   1.558   1.558   1.362   1.362   1.362   1.558   1.558   1.558
82    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
83    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
84    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
85    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
86    I        -0.638  -0.638  -0.638  -1.031  -1.031  -1.031  -0.638  -0.638  -0.638
87    E        -0.638  -0.638  -0.638  -0.728  -0.728  -0.728  -0.638  -0.638  -0.638
88    W         1.558   1.558   1.558   1.983   1.983   1.983   1.558   1.558   1.558
89    T        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
90    Q         1.558   1.558   1.558   1.734   1.734   1.734   1.558   1.558   1.558
91    K        -0.638  -0.638  -0.638  -0.728  -0.728  -0.728  -0.638  -0.638  -0.638
92    S        -0.638  -0.638  -0.638  -0.972  -0.972  -0.972  -0.638  -0.638  -0.638
93    M        -0.638  -0.638  -0.638  -0.264  -0.264  -0.264  -0.638  -0.638  -0.638
94    I        -0.638  -0.638  -0.638  -0.551  -0.551  -0.551  -0.638  -0.638  -0.638
95    S         1.558   1.558   1.558   1.362   1.362   1.362   1.558   1.558   1.558
96    Q        -0.638  -0.638  -0.638  -0.458  -0.458  -0.458  -0.638  -0.638  -0.638
97    T         1.558   1.558   1.558   1.588   1.588   1.588   1.558   1.558   1.558
98    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
99    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
100   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
101   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
102   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
103   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
104   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
105   I         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
106   A        -0.638  -0.638  -0.638  -0.591  -0.591  -0.591  -0.638  -0.638  -0.638
107   D        -0.638  -0.638  -0.638  -0.714  -0.714  -0.714  -0.638  -0.638  -0.638
108   S        -0.638  -0.638  -0.638  -0.497  -0.497  -0.497  -0.638  -0.638  -0.638
109   I         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
110   V         1.558   1.558   1.558   1.588   1.588   1.588   1.558   1.558   1.558
111   I        -0.638  -0.638  -0.638  -0.972  -0.972  -0.972  -0.638  -0.638  -0.638
112   M        -0.638  -0.638  -0.638  -0.578  -0.578  -0.578  -0.638  -0.638  -0.638
113   I         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
114   I         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
115   G        -0.638  -0.638  -0.638  -0.315  -0.315  -0.315  -0.638  -0.638  -0.638
116   L        -0.638  -0.638  -0.638  -0.784  -0.784  -0.784  -0.638  -0.638  -0.638
117   C         1.558   1.558   1.558   1.913   1.913   1.913   1.558   1.558   1.558
118   A        -0.638  -0.638  -0.638  -0.418  -0.418  -0.418  -0.638  -0.638  -0.638
119   S         1.558   1.558   1.558   1.362   1.362   1.362   1.558   1.558   1.558
120   D        -0.638  -0.638  -0.638  -0.784  -0.784  -0.784  -0.638  -0.638  -0.638
121   K        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
122   N        -0.638  -0.638  -0.638  -0.784  -0.784  -0.784  -0.638  -0.638  -0.638
123   V        -0.638  -0.638  -0.638  -0.742  -0.742  -0.742  -0.638  -0.638  -0.638
124   L        -0.638  -0.638  -0.638  -0.687  -0.687  -0.687  -0.638  -0.638  -0.638
125   S        -0.638  -0.638  -0.638  -0.784  -0.784  -0.784  -0.638  -0.638  -0.638
126   E        -0.638  -0.638  -0.638  -0.673  -0.673  -0.673  -0.638  -0.638  -0.638
127   S        -0.638  -0.638  -0.638  -0.728  -0.728  -0.728  -0.638  -0.638  -0.638
128   E        -0.638  -0.638  -0.638  -0.673  -0.673  -0.673  -0.638  -0.638  -0.638
129   L        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
130   K         1.558   1.558   1.558   1.514   1.514   1.514   1.558   1.558   1.558
131   E        -0.638  -0.638  -0.638  -0.714  -0.714  -0.714  -0.638  -0.638  -0.638
132   R        -0.638  -0.638  -0.638  -0.591  -0.591  -0.591  -0.638  -0.638  -0.638
133   N         1.558   1.558   1.558   1.606   1.606   1.606   1.558   1.558   1.558
134   H        -0.638  -0.638  -0.638  -0.418  -0.418  -0.418  -0.638  -0.638  -0.638
135   N        -0.638  -0.638  -0.638  -0.484  -0.484  -0.484  -0.638  -0.638  -0.638
136   V        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
137   W        -0.638  -0.638  -0.638  -0.214  -0.214  -0.214  -0.638  -0.638  -0.638
138   K        -0.638  -0.638  -0.638  -0.632  -0.632  -0.632  -0.638  -0.638  -0.638
139   I         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
140   Q         1.558   1.558   1.558   1.734   1.734   1.734   1.558   1.558   1.558
141   E         1.558   1.558   1.558   1.457   1.457   1.457   1.558   1.558   1.558
142   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
143   Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
144   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
145   L         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
146   F        -0.638  -0.638  -0.638  -0.152  -0.152  -0.152  -0.638  -0.638  -0.638
147   R        -0.638  -0.638  -0.638  -0.591  -0.591  -0.591  -0.638  -0.638  -0.638
148   E         1.558   1.558   1.558   1.457   1.457   1.457   1.558   1.558   1.558
149   Q         1.558   1.558   1.558   1.734   1.734   1.734   1.558   1.558   1.558
150   F         1.558   1.558   1.558   1.895   1.895   1.895   1.558   1.558   1.558
151   G         1.558   1.558   1.558   1.680   1.680   1.680   1.558   1.558   1.558
152   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
153   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
154   F        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
155   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
156   I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
157   D        -0.638  -0.638  -0.638  -0.418  -0.418  -0.418  -0.638  -0.638  -0.638
158   E        -0.638  -0.638  -0.638  -0.714  -0.714  -0.714  -0.638  -0.638  -0.638
159   G         1.558   1.558   1.558   1.680   1.680   1.680   1.558   1.558   1.558
160   I        -0.638  -0.638  -0.638  -0.551  -0.551  -0.551  -0.638  -0.638  -0.638
161   G        -0.638  -0.638  -0.638  -0.564  -0.564  -0.564  -0.638  -0.638  -0.638
162   K        -0.638  -0.638  -0.638  -0.728  -0.728  -0.728  -0.638  -0.638  -0.638
163   K        -0.638  -0.638  -0.638  -0.524  -0.524  -0.524  -0.638  -0.638  -0.638
164   E         1.558   1.558   1.558   1.457   1.457   1.457   1.558   1.558   1.558
165   N        -0.638  -0.638  -0.638  -0.484  -0.484  -0.484  -0.638  -0.638  -0.638
166   V        -0.638  -0.638  -0.638  -0.578  -0.578  -0.578  -0.638  -0.638  -0.638
167   K         1.558   1.558   1.558   1.514   1.514   1.514   1.558   1.558   1.558
168   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
169   G        -0.638  -0.638  -0.638  -0.315  -0.315  -0.315  -0.638  -0.638  -0.638
170   S        -0.638  -0.638  -0.638  -0.972  -0.972  -0.972  -0.638  -0.638  -0.638
171   V         1.558   1.558   1.558   1.588   1.588   1.588   1.558   1.558   1.558
172   T        -0.638  -0.638  -0.638  -0.632  -0.632  -0.632  -0.638  -0.638  -0.638
173   I        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
174   G         1.558   1.558   1.558   1.680   1.680   1.680   1.558   1.558   1.558
175   K        -0.638  -0.638  -0.638  -0.673  -0.673  -0.673  -0.638  -0.638  -0.638
176   S        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
177   K        -0.638  -0.638  -0.638  -0.632  -0.632  -0.632  -0.638  -0.638  -0.638
178   A        -0.638  -0.638  -0.638  -0.315  -0.315  -0.315  -0.638  -0.638  -0.638
179   T        -0.638  -0.638  -0.638  -0.328  -0.328  -0.328  -0.638  -0.638  -0.638
180   I        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
181   D         1.558   1.558   1.558   1.532   1.532   1.532   1.558   1.558   1.558
182   F        -0.638  -0.638  -0.638  -0.564  -0.564  -0.564  -0.638  -0.638  -0.638
183   S        -0.638  -0.638  -0.638  -0.742  -0.742  -0.742  -0.638  -0.638  -0.638
184   T        -0.638  -0.638  -0.638  -0.564  -0.564  -0.564  -0.638  -0.638  -0.638
185   M        -0.638  -0.638  -0.638  -0.578  -0.578  -0.578  -0.638  -0.638  -0.638
186   K         1.558   1.558   1.558   1.514   1.514   1.514   1.558   1.558   1.558
187   L        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
188   I         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
189   D        -0.638  -0.638  -0.638  -0.714  -0.714  -0.714  -0.638  -0.638  -0.638
190   C         1.558   1.558   1.558   1.913   1.913   1.913   1.558   1.558   1.558
191   N        -0.638  -0.638  -0.638  -0.605  -0.605  -0.605  -0.638  -0.638  -0.638
192   S         1.558   1.558   1.558   1.362   1.362   1.362   1.558   1.558   1.558
193   N        -0.638  -0.638  -0.638  -0.728  -0.728  -0.728  -0.638  -0.638  -0.638
194   P        -0.638  -0.638  -0.638  -0.551  -0.551  -0.551  -0.638  -0.638  -0.638
195   L         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
196   K         1.558   1.558   1.558   1.514   1.514   1.514   1.558   1.558   1.558
197   G         1.558   1.558   1.558   1.680   1.680   1.680   1.558   1.558   1.558
198   R         1.558   1.558   1.558   1.698   1.698   1.698   1.558   1.558   1.558
199   V        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
200   E         1.558   1.558   1.558   1.457   1.457   1.457   1.558   1.558   1.558
201   S        -0.638  -0.638  -0.638  -0.673  -0.673  -0.673  -0.638  -0.638  -0.638
202   I        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
203   L         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
204   S        -0.638  -0.638  -0.638  -0.659  -0.659  -0.659  -0.638  -0.638  -0.638
205   I        -0.638  -0.638  -0.638  -0.799  -0.799  -0.799  -0.638  -0.638  -0.638
206   G        -0.638  -0.638  -0.638  -0.315  -0.315  -0.315  -0.638  -0.638  -0.638
207   Q        -0.638  -0.638  -0.638  -0.564  -0.564  -0.564  -0.638  -0.638  -0.638
208   K        -0.638  -0.638  -0.638  -0.524  -0.524  -0.524  -0.638  -0.638  -0.638
209   L         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
210   T        -0.638  -0.638  -0.638  -0.742  -0.742  -0.742  -0.638  -0.638  -0.638
211   T        -0.638  -0.638  -0.638  -0.497  -0.497  -0.497  -0.638  -0.638  -0.638
212   P         1.558   1.558   1.558   1.913   1.913   1.913   1.558   1.558   1.558
213   L         1.558   1.558   1.558   1.286   1.286   1.286   1.558   1.558   1.558
214   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
215   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
216   C        -0.638  -0.638  -0.638  -0.497  -0.497  -0.497  -0.638  -0.638  -0.638
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/Q08553
Output conservation file - output/Q08553
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
