1     M         1.537   1.539   1.560   1.848   1.849   1.880   1.627   1.629   1.654
2     K         1.537   1.539   1.560   1.572   1.572   1.606   1.627   1.629   1.654
3     S         1.537   1.539   1.560   1.270   1.295   1.308   1.627   1.629   1.654
4     S        -0.097  -0.119  -0.153  -0.355  -0.364  -0.429  -0.199  -0.234  -0.285
5     K        -1.282  -1.279  -1.250  -1.389  -1.376  -1.331  -1.112  -1.107  -1.057
6     Q        -0.097  -0.097  -0.136   0.090   0.086   0.034  -0.199  -0.199  -0.259
7     L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
8     V        -1.282  -1.279  -1.250  -0.957  -0.958  -0.902  -1.112  -1.107  -1.057
9     Q         1.537   1.539   1.560   1.661   1.667   1.695   1.627   1.629   1.654
10    D        -0.097  -0.066  -0.134  -0.026   0.011  -0.079  -0.199  -0.151  -0.255
11    A         1.537   1.539   1.560   1.628   1.644   1.662   1.627   1.629   1.654
12    K        -1.282  -1.279  -1.250  -1.381  -1.389  -1.324  -1.112  -1.107  -1.057
13    D        -1.282  -1.279  -1.250  -1.197  -1.212  -1.141  -1.112  -1.107  -1.057
14    Y        -0.097  -0.119  -0.153   0.019  -0.018  -0.067  -0.199  -0.234  -0.285
15    R        -0.097  -0.119  -0.153  -0.006  -0.054  -0.111  -0.199  -0.234  -0.285
16    F         1.537   1.539   1.560   1.739   1.752   1.772   1.627   1.629   1.654
17    N         1.537   1.539   1.560   1.492   1.489   1.527   1.627   1.629   1.654
18    P        -0.097  -0.097  -0.136  -0.119  -0.116  -0.216  -0.199  -0.199  -0.259
19    A        -0.097  -0.066  -0.134  -0.156  -0.111  -0.213  -0.199  -0.151  -0.255
20    I        -0.097  -0.097  -0.136   0.055   0.051  -0.006  -0.199  -0.199  -0.259
21    P         1.537   1.539   1.560   1.706   1.708   1.739   1.627   1.629   1.654
22    L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
23    R        -1.282  -1.279  -1.250  -1.035  -1.037  -0.980  -1.112  -1.107  -1.057
24    I        -0.097  -0.066  -0.134  -0.355  -0.321  -0.400  -0.199  -0.151  -0.255
25    Y         1.537   1.539   1.560   1.628   1.628   1.662   1.627   1.629   1.654
26    L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
27    K        -0.097  -0.097  -0.136  -0.078  -0.076  -0.142  -0.199  -0.199  -0.259
28    T         1.537   1.539   1.560   1.639   1.661   1.673   1.627   1.629   1.654
29    C         1.537   1.539   1.560   1.880   1.884   1.912   1.627   1.629   1.654
30    I        -0.097  -0.119  -0.153   0.055   0.016  -0.033  -0.199  -0.234  -0.285
31    G        -1.282  -1.279  -1.250  -1.197  -1.183  -1.141  -1.112  -1.107  -1.057
32    I        -0.097  -0.119  -0.153  -0.166  -0.221  -0.301  -0.199  -0.234  -0.285
33    L        -0.097  -0.097  -0.136  -0.311  -0.324  -0.353  -0.199  -0.199  -0.259
34    E        -0.097  -0.119  -0.153  -0.145  -0.199  -0.252  -0.199  -0.234  -0.285
35    K        -1.282  -1.279  -1.250  -1.309  -1.323  -1.252  -1.112  -1.107  -1.057
36    A         1.537   1.539   1.560   1.628   1.644   1.662   1.627   1.629   1.654
37    Q        -0.097  -0.119  -0.153  -0.161  -0.200  -0.294  -0.199  -0.234  -0.285
38    C        -1.282  -1.279  -1.250  -1.115  -1.133  -1.059  -1.112  -1.107  -1.057
39    A        -1.282  -1.279  -1.250  -1.210  -1.186  -1.154  -1.112  -1.107  -1.057
40    F        -0.097  -0.097  -0.136   0.070   0.080  -0.003  -0.199  -0.199  -0.259
41    Q        -0.097  -0.097  -0.136   0.024   0.022  -0.041  -0.199  -0.199  -0.259
42    A        -1.282  -1.279  -1.250  -0.970  -0.963  -0.915  -1.112  -1.107  -1.057
43    N        -0.097  -0.119  -0.153  -0.031  -0.072  -0.095  -0.199  -0.234  -0.285
44    D        -0.097  -0.097  -0.136   0.019   0.011  -0.064  -0.199  -0.199  -0.259
45    L        -1.282  -1.279  -1.250  -1.274  -1.274  -1.217  -1.112  -1.107  -1.057
46    S        -0.097  -0.097  -0.136  -0.388  -0.376  -0.444  -0.199  -0.199  -0.259
47    L        -0.097  -0.097  -0.136  -0.344  -0.357  -0.390  -0.199  -0.199  -0.259
48    S        -0.097  -0.097  -0.136  -0.360  -0.339  -0.412  -0.199  -0.199  -0.259
49    F        -0.097  -0.066  -0.134   0.019   0.065  -0.037  -0.199  -0.151  -0.255
50    I        -1.282  -1.279  -1.250  -1.288  -1.286  -1.231  -1.112  -1.107  -1.057
51    Y        -0.097  -0.097  -0.136  -0.198  -0.210  -0.293  -0.199  -0.199  -0.259
52    Y         1.537   1.539   1.560   1.628   1.628   1.662   1.627   1.629   1.654
53    F        -0.097  -0.097  -0.136   0.085   0.090   0.014  -0.199  -0.199  -0.259
54    R         1.537   1.539   1.560   1.683   1.685   1.717   1.627   1.629   1.654
55    Y         1.537   1.539   1.560   1.628   1.628   1.662   1.627   1.629   1.654
56    V        -0.097  -0.097  -0.136  -0.083  -0.093  -0.182  -0.199  -0.199  -0.259
57    D         1.537   1.539   1.560   1.750   1.752   1.783   1.627   1.629   1.654
58    L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
59    L        -0.097  -0.066  -0.134   0.040   0.095  -0.059  -0.199  -0.151  -0.255
60    T        -0.097  -0.097  -0.136  -0.187  -0.179  -0.283  -0.199  -0.199  -0.259
61    N         1.537   1.539   1.560   1.492   1.489   1.527   1.627   1.629   1.654
62    K        -0.097  -0.097  -0.136  -0.057  -0.064  -0.118  -0.199  -0.199  -0.259
63    L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
64    S        -1.282  -1.279  -1.250  -1.245  -1.224  -1.189  -1.112  -1.107  -1.057
65    R        -1.282  -1.279  -1.250  -1.081  -1.094  -1.026  -1.112  -1.107  -1.057
66    H         1.537   1.539   1.560   1.826   1.827   1.859   1.627   1.629   1.654
67    P        -0.097  -0.097  -0.136  -0.119  -0.116  -0.216  -0.199  -0.199  -0.259
68    E        -0.097  -0.119  -0.153  -0.078  -0.115  -0.170  -0.199  -0.234  -0.285
69    L        -1.282  -1.279  -1.250  -1.281  -1.276  -1.224  -1.112  -1.107  -1.057
70    L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
71    R         1.537   1.539   1.560   1.656   1.659   1.690   1.627   1.629   1.654
72    M        -0.242  -0.240  -0.213  -0.337  -0.328  -0.287  -0.427  -0.424  -0.380
73    D        -0.242  -0.240  -0.213  -0.220  -0.211  -0.172  -0.427  -0.424  -0.380
74    A        -0.242  -0.240  -0.213  -0.493  -0.485  -0.442  -0.427  -0.424  -0.380
75    S        -0.242  -0.240  -0.213  -0.505  -0.485  -0.454  -0.427  -0.424  -0.380
76    S        -0.242  -0.240  -0.213  -0.337  -0.328  -0.287  -0.427  -0.424  -0.380
77    S        -1.282  -1.279  -1.250  -1.714  -1.712  -1.653  -1.112  -1.107  -1.057
78    S        -1.282  -1.279  -1.250  -1.288  -1.253  -1.231  -1.112  -1.107  -1.057
79    S        -0.097  -0.119  -0.153  -0.427  -0.452  -0.516  -0.199  -0.234  -0.285
80    S        -1.282  -1.279  -1.250  -1.217  -1.196  -1.161  -1.112  -1.107  -1.057
81    S        -0.097  -0.097  -0.136  -0.388  -0.376  -0.444  -0.199  -0.199  -0.259
82    Y        -1.282  -1.279  -1.250  -1.411  -1.405  -1.353  -1.112  -1.107  -1.057
83    I        -0.097  -0.066  -0.134  -0.355  -0.321  -0.400  -0.199  -0.151  -0.255
84    H        -0.097  -0.066  -0.134   0.060   0.098   0.009  -0.199  -0.151  -0.255
85    K        -0.097  -0.119  -0.153  -0.026  -0.068  -0.108  -0.199  -0.234  -0.285
86    R        -0.097  -0.119  -0.153   0.035  -0.008  -0.063  -0.199  -0.234  -0.285
87    E         1.537   1.539   1.560   1.572   1.569   1.606   1.627   1.629   1.654
88    Y         1.537   1.539   1.560   1.628   1.628   1.662   1.627   1.629   1.654
89    L        -1.282  -1.279  -1.250  -1.345  -1.338  -1.288  -1.112  -1.107  -1.057
90    Q         1.537   1.539   1.560   1.661   1.667   1.695   1.627   1.629   1.654
91    L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
92    I        -0.097  -0.066  -0.134  -0.355  -0.321  -0.400  -0.199  -0.151  -0.255
93    K        -0.097  -0.119  -0.153  -0.057  -0.100  -0.145  -0.199  -0.234  -0.285
94    L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
95    E         1.537   1.539   1.560   1.572   1.569   1.606   1.627   1.629   1.654
96    V         1.537   1.539   1.560   1.750   1.752   1.783   1.627   1.629   1.654
97    P         1.537   1.539   1.560   1.706   1.708   1.739   1.627   1.629   1.654
98    A        -0.097  -0.119  -0.153   0.060   0.033  -0.019  -0.199  -0.234  -0.285
99    V        -0.097  -0.066  -0.134   0.055   0.100  -0.002  -0.199  -0.151  -0.255
100   C        -1.282  -1.279  -1.250  -1.081  -1.105  -1.026  -1.112  -1.107  -1.057
101   K         1.537   1.539   1.560   1.572   1.572   1.606   1.627   1.629   1.654
102   I         1.537   1.539   1.560   1.661   1.666   1.695   1.627   1.629   1.654
103   I        -1.282  -1.279  -1.250  -0.996  -0.982  -0.941  -1.112  -1.107  -1.057
104   E         1.537   1.539   1.560   1.572   1.569   1.606   1.627   1.629   1.654
105   S        -0.097  -0.066  -0.134  -0.246  -0.187  -0.332  -0.199  -0.151  -0.255
106   L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
107   R        -0.097  -0.066  -0.134  -0.057  -0.015  -0.114  -0.199  -0.151  -0.255
108   T        -0.097  -0.097  -0.136  -0.006   0.007  -0.072  -0.199  -0.199  -0.259
109   Q        -1.282  -1.279  -1.250  -1.204  -1.212  -1.147  -1.112  -1.107  -1.057
110   I        -0.097  -0.119  -0.153  -0.166  -0.221  -0.301  -0.199  -0.234  -0.285
111   D         1.537   1.539   1.560   1.750   1.752   1.783   1.627   1.629   1.654
112   S        -0.097  -0.066  -0.134  -0.193  -0.115  -0.281  -0.199  -0.151  -0.255
113   Q        -1.282  -1.279  -1.250  -0.970  -0.967  -0.915  -1.112  -1.107  -1.057
114   Y         1.537   1.539   1.560   1.628   1.628   1.662   1.627   1.629   1.654
115   S        -1.282  -1.279  -1.250  -1.448  -1.434  -1.390  -1.112  -1.107  -1.057
116   K        -0.242  -0.240  -0.213  -0.313  -0.316  -0.264  -0.427  -0.424  -0.380
117   L        -0.242  -0.240  -0.213  -0.420  -0.424  -0.370  -0.427  -0.424  -0.380
118   Q        -0.242  -0.240  -0.213  -0.348  -0.352  -0.299  -0.427  -0.424  -0.380
119   T        -0.242  -0.240  -0.213  -0.175  -0.165  -0.126  -0.427  -0.424  -0.380
120   S         1.537   1.539   1.560   1.270   1.295   1.308   1.627   1.629   1.654
121   L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
122   A         1.537   1.539   1.560   1.628   1.644   1.662   1.627   1.629   1.654
123   N         1.537   1.539   1.560   1.492   1.489   1.527   1.627   1.629   1.654
124   N         1.537   1.539   1.560   1.492   1.489   1.527   1.627   1.629   1.654
125   I        -0.097  -0.097  -0.136   0.055   0.051  -0.006  -0.199  -0.199  -0.259
126   A         1.537   1.539   1.560   1.628   1.644   1.662   1.627   1.629   1.654
127   K        -1.282  -1.279  -1.250  -1.403  -1.389  -1.346  -1.112  -1.107  -1.057
128   P        -0.097  -0.097  -0.136  -0.119  -0.116  -0.216  -0.199  -0.199  -0.259
129   N        -1.282  -1.279  -1.250  -1.210  -1.199  -1.154  -1.112  -1.107  -1.057
130   -        -0.242  -0.240  -0.213  -0.509  -0.496  -0.458  -0.427  -0.424  -0.380
131   -        -0.242  -0.240  -0.213  -0.228  -0.218  -0.179  -0.427  -0.424  -0.380
132   -        -0.242  -0.240  -0.213  -0.264  -0.279  -0.215  -0.427  -0.424  -0.380
133   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
134   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
135   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
136   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
137   I        -1.282  -1.279  -1.250  -1.210  -1.196  -1.154  -1.112  -1.107  -1.057
138   N        -1.282  -1.279  -1.250  -1.115  -1.114  -1.059  -1.112  -1.107  -1.057
139   A         1.537   1.539   1.560   1.628   1.644   1.662   1.627   1.629   1.654
140   N        -1.282  -1.279  -1.250  -1.389  -1.407  -1.331  -1.112  -1.107  -1.057
141   T        -1.282  -1.279  -1.250  -1.231  -1.239  -1.175  -1.112  -1.107  -1.057
142   T        -0.097  -0.119  -0.153   0.070   0.047  -0.009  -0.199  -0.234  -0.285
143   P        -1.282  -1.279  -1.250  -1.028  -1.019  -0.973  -1.112  -1.107  -1.057
144   V        -1.282  -1.279  -1.250  -1.162  -1.174  -1.106  -1.112  -1.107  -1.057
145   Q        -1.282  -1.279  -1.250  -1.088  -1.091  -1.033  -1.112  -1.107  -1.057
146   V        -1.282  -1.279  -1.250  -1.288  -1.270  -1.231  -1.112  -1.107  -1.057
147   E        -0.097  -0.097  -0.136  -0.026  -0.036  -0.083  -0.199  -0.199  -0.259
148   Q        -1.282  -1.279  -1.250  -1.135  -1.140  -1.079  -1.112  -1.107  -1.057
149   Q        -1.282  -1.279  -1.250  -0.957  -0.951  -0.902  -1.112  -1.107  -1.057
150   P        -1.282  -1.279  -1.250  -1.035  -1.036  -0.980  -1.112  -1.107  -1.057
151   L        -0.097  -0.119  -0.153  -0.366  -0.402  -0.439  -0.199  -0.234  -0.285
152   P        -0.097  -0.119  -0.153   0.159   0.121   0.081  -0.199  -0.234  -0.285
153   K        -0.242  -0.240  -0.213  -0.197  -0.199  -0.149  -0.427  -0.424  -0.380
154   K        -0.097  -0.066  -0.134  -0.388  -0.325  -0.440  -0.199  -0.151  -0.255
155   S        -0.097  -0.119  -0.153  -0.251  -0.266  -0.305  -0.199  -0.234  -0.285
156   F        -0.097  -0.119  -0.153   0.085   0.052  -0.016  -0.199  -0.234  -0.285
157   D        -0.097  -0.119  -0.153   0.169   0.127   0.083  -0.199  -0.234  -0.285
158   E        -0.097  -0.119  -0.153  -0.109  -0.158  -0.208  -0.199  -0.234  -0.285
159   Y        -1.282  -1.279  -1.250  -1.128  -1.118  -1.073  -1.112  -1.107  -1.057
160   S        -0.097  -0.097  -0.136  -0.388  -0.374  -0.444  -0.199  -0.199  -0.259
161   F        -0.097  -0.119  -0.153  -0.093  -0.140  -0.231  -0.199  -0.234  -0.285
162   N        -0.097  -0.119  -0.153  -0.062  -0.105  -0.132  -0.199  -0.234  -0.285
163   Q        -0.097  -0.119  -0.153  -0.026  -0.069  -0.131  -0.199  -0.234  -0.285
164   S        -0.097  -0.119  -0.153  -0.427  -0.452  -0.516  -0.199  -0.234  -0.285
165   I        -0.097  -0.119  -0.153  -0.026  -0.071  -0.131  -0.199  -0.234  -0.285
166   S        -0.097  -0.119  -0.153  -0.427  -0.452  -0.516  -0.199  -0.234  -0.285
167   F        -0.097  -0.097  -0.136   0.227   0.233   0.178  -0.199  -0.199  -0.259
168   F        -0.097  -0.119  -0.153   0.009  -0.031  -0.107  -0.199  -0.234  -0.285
169   Q        -1.282  -1.279  -1.250  -1.252  -1.263  -1.196  -1.112  -1.107  -1.057
170   K        -1.282  -1.279  -1.250  -1.035  -1.037  -0.980  -1.112  -1.107  -1.057
171   I        -0.097  -0.097  -0.136  -0.161  -0.155  -0.256  -0.199  -0.199  -0.259
172   S        -0.097  -0.119  -0.153  -0.427  -0.452  -0.516  -0.199  -0.234  -0.285
173   N        -1.282  -1.279  -1.250  -1.508  -1.528  -1.450  -1.112  -1.107  -1.057
174   A        -1.282  -1.279  -1.250  -0.906  -0.897  -0.852  -1.112  -1.107  -1.057
175   Q        -0.242  -0.240  -0.213  -0.348  -0.352  -0.299  -0.427  -0.424  -0.380
176   L        -0.242  -0.240  -0.213  -0.493  -0.498  -0.442  -0.427  -0.424  -0.380
177   N        -0.242  -0.240  -0.213  -0.592  -0.585  -0.540  -0.427  -0.424  -0.380
178   T        -0.242  -0.240  -0.213  -0.220  -0.199  -0.172  -0.427  -0.424  -0.380
179   G        -0.242  -0.240  -0.213   0.025   0.025   0.072  -0.427  -0.424  -0.380
180   A        -1.282  -1.279  -1.250  -0.931  -0.914  -0.877  -1.112  -1.107  -1.057
181   S        -0.097  -0.119  -0.153  -0.333  -0.351  -0.403  -0.199  -0.234  -0.285
182   S        -0.097  -0.066  -0.134  -0.193  -0.115  -0.281  -0.199  -0.151  -0.255
183   Q        -0.097  -0.119  -0.153   0.035  -0.004  -0.057  -0.199  -0.234  -0.285
184   S        -0.097  -0.119  -0.153  -0.427  -0.452  -0.516  -0.199  -0.234  -0.285
185   Q        -1.282  -1.279  -1.250  -0.906  -0.902  -0.852  -1.112  -1.107  -1.057
186   A        -0.097  -0.066  -0.134  -0.360  -0.292  -0.408  -0.199  -0.151  -0.255
187   T        -0.242  -0.240  -0.213  -0.301  -0.293  -0.252  -0.427  -0.424  -0.380
188   A        -0.242  -0.240  -0.213  -0.278  -0.281  -0.229  -0.427  -0.424  -0.380
189   R        -0.242  -0.240  -0.213  -0.152  -0.154  -0.104  -0.427  -0.424  -0.380
190   D        -0.242  -0.240  -0.213  -0.197  -0.199  -0.149  -0.427  -0.424  -0.380
191   E        -0.242  -0.240  -0.213  -0.372  -0.376  -0.322  -0.427  -0.424  -0.380
192   A        -0.242  -0.240  -0.213  -0.163  -0.165  -0.115  -0.427  -0.424  -0.380
193   Y        -0.242  -0.240  -0.213  -0.505  -0.498  -0.454  -0.427  -0.424  -0.380
194   R        -0.097  -0.066  -0.134  -0.130  -0.093  -0.183  -0.199  -0.151  -0.255
195   L        -1.282  -1.279  -1.250  -1.463  -1.450  -1.405  -1.112  -1.107  -1.057
196   N        -1.282  -1.279  -1.250  -1.204  -1.199  -1.147  -1.112  -1.107  -1.057
197   Y         1.537   1.539   1.560   1.628   1.628   1.662   1.627   1.629   1.654
198   P         1.537   1.539   1.560   1.706   1.708   1.739   1.627   1.629   1.654
199   E        -0.097  -0.119  -0.153  -0.026  -0.071  -0.108  -0.199  -0.234  -0.285
200   L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
201   P         1.537   1.539   1.560   1.706   1.708   1.739   1.627   1.629   1.654
202   R        -1.282  -1.279  -1.250  -1.149  -1.145  -1.093  -1.112  -1.107  -1.057
203   L         1.537   1.539   1.560   1.259   1.253   1.296   1.627   1.629   1.654
204   T        -1.282  -1.279  -1.250  -1.455  -1.447  -1.397  -1.112  -1.107  -1.057
205   F        -0.242  -0.240  -0.213  -0.238  -0.236  -0.189  -0.427  -0.424  -0.380
206   S        -0.242  -0.240  -0.213  -0.599  -0.567  -0.547  -0.427  -0.424  -0.380
207   T        -0.242  -0.240  -0.213  -0.599  -0.567  -0.547  -0.427  -0.424  -0.380
208   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
209   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
210   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
211   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
212   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
213   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
214   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
215   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
216   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
217   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/Q08003
Output conservation file - output/Q08003
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
