1     M         1.481   1.507   1.609   1.623   1.663   1.822   1.627   1.671   1.843
2     N         0.736   0.566   0.465   0.961   0.764   0.644   0.790   0.520   0.308
3     R         1.481   1.507   1.609   1.726   1.764   1.920   1.627   1.671   1.843
4     I         0.172   0.195   0.305  -0.142  -0.106   0.079  -0.168  -0.141   0.005
5     F         1.481   1.507   1.609   1.797   1.835   1.988   1.627   1.671   1.843
6     G         1.481   1.507   1.609   1.651   1.696   1.849   1.627   1.671   1.843
7     Y        -1.045  -0.964  -0.989  -0.751  -0.624  -0.708  -1.030  -0.937  -0.920
8     G        -0.409  -0.355  -0.395  -0.380  -0.269  -0.389  -0.561  -0.471  -0.529
9     N         0.130   0.148   0.289  -0.129  -0.107   0.120  -0.249  -0.231  -0.026
10    K        -0.409  -0.333  -0.385  -0.424  -0.295  -0.347  -0.561  -0.443  -0.515
11    K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
12    S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
13    H        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
14    D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
15    Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
16    L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
17    L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
18    Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
19    E        -0.918  -1.020  -0.980  -1.015  -1.212  -1.173  -0.886  -0.996  -0.910
20    S         0.172   0.195   0.305   0.134   0.160   0.300  -0.168  -0.141   0.005
21    N        -1.261  -1.376  -1.402  -1.026  -1.186  -1.230  -1.006  -1.126  -1.101
22    Q        -0.918  -0.968  -0.968  -0.740  -0.873  -0.924  -0.886  -0.953  -0.900
23    S        -0.576  -0.511  -0.439  -0.722  -0.622  -0.525  -0.766  -0.679  -0.589
24    M         0.172   0.195   0.305  -0.151  -0.117   0.069  -0.168  -0.141   0.005
25    N        -0.918  -0.932  -0.956  -0.759  -0.799  -0.820  -0.886  -0.916  -0.886
26    Q        -0.918  -0.887  -0.960  -1.018  -0.982  -1.093  -0.886  -0.851  -0.888
27    A         1.481   1.507   1.609   1.469   1.506   1.675   1.627   1.671   1.843
28    Q        -0.660  -0.589  -0.467  -0.802  -0.711  -0.490  -0.886  -0.799  -0.629
29    Q        -1.261  -1.210  -1.021  -1.596  -1.520  -1.225  -1.245  -1.187  -0.952
30    S        -0.446  -0.322  -0.388  -0.498  -0.330  -0.378  -0.647  -0.492  -0.532
31    L         0.172   0.286   0.348  -0.142   0.037   0.138  -0.168   0.031   0.087
32    S        -0.300  -0.279  -0.395  -0.407  -0.378  -0.595  -0.407  -0.386  -0.532
33    N        -2.290  -2.242  -2.074  -1.881  -1.820  -1.604  -1.604  -1.562  -1.348
34    R         1.481   1.507   1.609   1.726   1.764   1.920   1.627   1.671   1.843
35    I        -1.604  -1.592  -1.429  -1.521  -1.525  -1.282  -1.365  -1.342  -1.127
36    S        -0.918  -0.900  -0.932  -0.867  -0.844  -0.904  -0.886  -0.851  -0.855
37    Q         0.172   0.195   0.305  -0.152  -0.133   0.031  -0.168  -0.141   0.005
38    L        -0.643  -0.691  -0.901  -0.506  -0.578  -0.777  -0.527  -0.599  -0.818
39    D         0.736   0.566   0.465   0.760   0.535   0.346   0.790   0.520   0.308
40    T         0.172   0.195   0.305   0.175   0.203   0.354  -0.168  -0.141   0.005
41    Q        -0.446  -0.375  -0.415  -0.720  -0.629  -0.647  -0.647  -0.567  -0.565
42    I         0.110   0.158   0.300  -0.208  -0.089   0.126  -0.288  -0.212  -0.005
43    A         0.110   0.158   0.296  -0.216  -0.133   0.086  -0.288  -0.210  -0.012
44    Q        -0.446  -0.414  -0.421  -0.720  -0.680  -0.659  -0.647  -0.607  -0.573
45    L         0.172   0.266   0.320  -0.142   0.005   0.098  -0.168  -0.006   0.034
46    N         0.026  -0.118  -0.322   0.267   0.057  -0.262   0.071  -0.135  -0.424
47    F        -0.660  -0.583  -0.467  -0.713  -0.597  -0.447  -0.886  -0.792  -0.629
48    Q         0.110   0.158   0.300  -0.364  -0.297  -0.050  -0.288  -0.212  -0.005
49    L         1.481   1.507   1.609   1.297   1.337   1.511   1.627   1.671   1.843
50    Q         0.369   0.375   0.365   0.231   0.229   0.166   0.191   0.192   0.122
51    N        -1.475  -1.545  -1.403  -1.235  -1.320  -1.123  -1.245  -1.297  -1.106
52    I        -0.918  -1.041  -0.980  -0.607  -0.766  -0.723  -0.886  -1.011  -0.910
53    Q         1.481   1.507   1.609   1.350   1.372   1.562   1.627   1.671   1.843
54    K        -0.446  -0.414  -0.421  -0.741  -0.704  -0.670  -0.647  -0.607  -0.573
55    N         0.736   0.715   0.485   0.805   0.796   0.463   0.790   0.758   0.345
56    L        -0.576  -0.533  -0.467  -0.635  -0.573  -0.531  -0.766  -0.711  -0.628
57    Q        -0.918  -0.955  -0.948  -0.976  -1.058  -1.062  -0.886  -0.932  -0.878
58    -        -1.193  -1.154  -1.003  -1.118  -1.047  -0.835  -1.186  -1.133  -0.934
59    -         0.298   0.229   0.305   0.358   0.225   0.317   0.064  -0.075   0.005
60    R         0.369   0.410   0.370   0.519   0.585   0.451   0.191   0.254   0.130
61    S        -0.446  -0.547  -0.434  -0.610  -0.711  -0.519  -0.647  -0.752  -0.590
62    N        -0.300  -0.299  -0.394  -0.155  -0.141  -0.336  -0.407  -0.400  -0.531
63    N        -0.643  -0.634  -0.910  -0.151  -0.142  -0.562  -0.527  -0.515  -0.829
64    K         0.736   0.715   0.485   0.991   0.977   0.609   0.790   0.758   0.345
65    Q         0.110   0.158   0.300  -0.314  -0.249  -0.008  -0.288  -0.212  -0.005
66    P        -1.818  -1.859  -1.774  -1.485  -1.538  -1.398  -1.365  -1.398  -1.252
67    S        -0.300  -0.299  -0.394  -0.249  -0.246  -0.385  -0.407  -0.400  -0.531
68    L         0.736   0.826   0.493   0.662   0.777   0.359   0.790   0.924   0.359
69    R         0.172   0.195   0.305   0.039   0.079   0.250  -0.168  -0.141   0.005
70    K         0.026   0.019  -0.300   0.037   0.014  -0.453   0.071   0.062  -0.393
71    Q        -0.576  -0.614  -0.475  -0.731  -0.787  -0.567  -0.766  -0.824  -0.639
72    A         1.481   1.507   1.609   1.469   1.506   1.675   1.627   1.671   1.843
73    L         0.026  -0.025  -0.301   0.043  -0.034  -0.371   0.071  -0.019  -0.394
74    K         0.736   0.566   0.465   0.805   0.594   0.429   0.790   0.520   0.308
75    I        -0.446  -0.463  -0.413  -0.597  -0.587  -0.472  -0.647  -0.664  -0.565
76    L         1.481   1.507   1.609   1.297   1.337   1.511   1.627   1.671   1.843
77    N        -0.446  -0.375  -0.415  -0.363  -0.268  -0.320  -0.647  -0.567  -0.565
78    K         0.172   0.195   0.305  -0.200  -0.180   0.002  -0.168  -0.141   0.005
79    R         0.736   0.566   0.465   1.066   0.835   0.640   0.790   0.520   0.308
80    K         1.481   1.507   1.609   1.449   1.499   1.656   1.627   1.671   1.843
81    Q         0.736   0.566   0.465   0.718   0.488   0.370   0.790   0.520   0.308
82    L        -1.132  -1.038  -1.002  -1.105  -0.970  -0.840  -1.125  -1.034  -0.934
83    E         1.481   1.507   1.609   1.383   1.425   1.594   1.627   1.671   1.843
84    N        -0.643  -0.799  -0.912  -0.489  -0.737  -0.945  -0.527  -0.721  -0.831
85    M         0.172   0.195   0.305  -0.104  -0.087   0.110  -0.168  -0.141   0.005
86    K        -0.446  -0.543  -0.413  -0.514  -0.649  -0.456  -0.647  -0.744  -0.565
87    D         0.736   0.566   0.465   0.755   0.523   0.334   0.790   0.520   0.308
88    S         0.369   0.375   0.365   0.158   0.146   0.123   0.191   0.192   0.122
89    L         0.369   0.407   0.340   0.166   0.225   0.127   0.191   0.249   0.073
90    D        -0.660  -0.573  -0.457  -1.092  -0.962  -0.775  -0.886  -0.781  -0.616
91    S        -0.918  -0.939  -0.929  -0.929  -0.972  -0.971  -0.886  -0.890  -0.851
92    Q         1.481   1.507   1.609   1.350   1.372   1.562   1.627   1.671   1.843
93    S         0.736   0.771   0.489   0.836   0.887   0.524   0.790   0.843   0.353
94    W         0.736   0.566   0.465   1.244   1.036   0.877   0.790   0.520   0.308
95    S         0.172   0.195   0.305  -0.006   0.023   0.176  -0.168  -0.141   0.005
96    M         1.481   1.507   1.609   1.623   1.663   1.822   1.627   1.671   1.843
97    T        -0.918  -0.896  -0.952  -0.876  -0.899  -1.003  -0.886  -0.882  -0.882
98    Q         1.481   1.507   1.609   1.350   1.372   1.562   1.627   1.671   1.843
99    A         0.736   0.776   0.493   0.842   0.896   0.536   0.790   0.850   0.360
100   Q        -0.300  -0.237  -0.385  -0.460  -0.422  -0.599  -0.407  -0.359  -0.522
101   L         0.026   0.017  -0.292   0.309   0.297  -0.201   0.071   0.060  -0.382
102   T         0.736   0.771   0.489   0.971   1.019   0.635   0.790   0.843   0.353
103   N        -0.643  -0.638  -0.888  -0.351  -0.349  -0.786  -0.527  -0.520  -0.804
104   D         0.369   0.313   0.331   0.210   0.110   0.082   0.191   0.081   0.056
105   N         0.736   0.566   0.465   0.901   0.672   0.493   0.790   0.520   0.308
106   L         1.481   1.507   1.609   1.297   1.337   1.511   1.627   1.671   1.843
107   Q         0.172   0.244   0.315  -0.164  -0.029   0.045  -0.168  -0.046   0.025
108   N         1.481   1.507   1.609   1.559   1.598   1.761   1.627   1.671   1.843
109   T         0.736   0.826   0.493   0.979   1.091   0.660   0.790   0.924   0.359
110   M         1.481   1.507   1.609   1.623   1.663   1.822   1.627   1.671   1.843
111   I        -0.300  -0.411  -0.393  -0.081  -0.242  -0.260  -0.407  -0.542  -0.534
112   T         1.481   1.507   1.609   1.607   1.644   1.807   1.627   1.671   1.843
113   I         0.172   0.219   0.302   0.191   0.269   0.367  -0.168  -0.094  -0.000
114   N        -0.446  -0.525  -0.414  -0.599  -0.704  -0.554  -0.647  -0.716  -0.563
115   A         0.026  -0.069  -0.310   0.219   0.082  -0.228   0.071  -0.073  -0.407
116   L         0.110   0.140   0.290  -0.221  -0.177   0.058  -0.288  -0.246  -0.024
117   K         0.736   0.566   0.465   0.775   0.544   0.352   0.790   0.520   0.308
118   Q        -1.475  -1.460  -1.395  -1.535  -1.557  -1.425  -1.245  -1.224  -1.098
119   T         0.369   0.519   0.423   0.410   0.646   0.461   0.191   0.442   0.231
120   N         0.736   0.566   0.465   0.902   0.672   0.496   0.790   0.520   0.308
121   N        -0.643  -0.797  -0.911  -0.454  -0.654  -0.854  -0.527  -0.718  -0.830
122   A        -1.002  -0.866  -0.960  -1.209  -1.048  -1.130  -1.006  -0.875  -0.892
123   M         0.736   0.715   0.485   0.662   0.645   0.347   0.790   0.758   0.345
124   K         1.481   1.507   1.609   1.449   1.499   1.656   1.627   1.671   1.843
125   A        -1.132  -1.179  -1.003  -1.371  -1.435  -1.183  -1.125  -1.156  -0.935
126   Q        -0.300  -0.159  -0.334  -0.420  -0.223  -0.474  -0.407  -0.197  -0.443
127   Y         0.736   0.566   0.465   1.132   0.902   0.702   0.790   0.520   0.308
128   G         0.026  -0.113  -0.316   0.338   0.141  -0.219   0.071  -0.129  -0.416
129   K         0.736   0.566   0.465   0.805   0.594   0.429   0.790   0.520   0.308
130   I         0.369   0.290   0.326   0.507   0.380   0.403   0.191   0.039   0.045
131   N        -0.446  -0.533  -0.406  -0.576  -0.683  -0.510  -0.647  -0.729  -0.557
132   I         0.736   0.855   0.499   1.011   1.162   0.698   0.790   0.966   0.370
133   D         0.736   0.566   0.465   0.760   0.535   0.346   0.790   0.520   0.308
134   K         0.736   0.875   0.502   0.780   0.968   0.432   0.790   0.993   0.376
135   L         0.172   0.219   0.304  -0.020   0.070   0.141  -0.168  -0.093   0.004
136   Q         0.172   0.195   0.305  -0.224  -0.204  -0.033  -0.168  -0.141   0.005
137   D        -0.643  -0.691  -0.901  -0.472  -0.551  -0.851  -0.527  -0.599  -0.818
138   M         0.172   0.195   0.305  -0.151  -0.117   0.069  -0.168  -0.141   0.005
139   Q         1.481   1.507   1.609   1.350   1.372   1.562   1.627   1.671   1.843
140   D         1.481   1.507   1.609   1.430   1.478   1.638   1.627   1.671   1.843
141   E         1.481   1.507   1.609   1.383   1.425   1.594   1.627   1.671   1.843
142   M         0.736   0.566   0.465   0.989   0.775   0.614   0.790   0.520   0.308
143   L        -1.132  -1.179  -1.000  -1.375  -1.458  -1.168  -1.125  -1.156  -0.931
144   D         1.481   1.507   1.609   1.430   1.478   1.638   1.627   1.671   1.843
145   L         0.736   0.566   0.465   0.688   0.490   0.381   0.790   0.520   0.308
146   I        -0.300  -0.397  -0.391  -0.215  -0.330  -0.398  -0.407  -0.521  -0.527
147   E         0.369   0.377   0.364   0.210   0.226   0.151   0.191   0.196   0.119
148   Q        -1.475  -1.455  -1.419  -1.487  -1.471  -1.345  -1.245  -1.213  -1.117
149   G        -0.446  -0.503  -0.402  -0.478  -0.517  -0.391  -0.647  -0.683  -0.544
150   D        -1.475  -1.504  -1.421  -1.403  -1.440  -1.348  -1.245  -1.268  -1.120
151   E         1.481   1.507   1.609   1.383   1.425   1.594   1.627   1.671   1.843
152   L         0.369   0.437   0.371   0.166   0.270   0.173   0.191   0.302   0.132
153   Q         0.736   0.566   0.465   0.706   0.469   0.339   0.790   0.520   0.308
154   E         0.026   0.075  -0.288   0.047   0.117  -0.453   0.071   0.139  -0.376
155   V        -0.918  -0.717  -0.930  -0.716  -0.416  -0.761  -0.886  -0.653  -0.856
156   L         0.736   0.826   0.493   0.662   0.777   0.359   0.790   0.924   0.359
157   A        -0.918  -0.892  -0.937  -0.937  -0.863  -0.978  -0.886  -0.846  -0.863
158   M        -1.132  -1.188  -1.000  -1.001  -1.112  -0.828  -1.125  -1.166  -0.932
159   N        -0.446  -0.364  -0.384  -0.579  -0.432  -0.472  -0.647  -0.526  -0.521
160   N        -0.918  -1.021  -0.980  -0.503  -0.662  -0.602  -0.886  -0.997  -0.910
161   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
162   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
163   G        -1.585  -1.593  -1.427  -1.642  -1.648  -1.404  -1.343  -1.336  -1.124
164   E        -0.918  -1.041  -0.980  -0.749  -0.933  -0.904  -0.886  -1.011  -0.910
165   L        -0.918  -1.041  -0.980  -0.680  -0.888  -0.868  -0.886  -1.011  -0.910
166   D        -0.300  -0.420  -0.399  -0.381  -0.528  -0.542  -0.407  -0.555  -0.542
167   D         0.026  -0.043  -0.309   0.122   0.031  -0.387   0.071  -0.041  -0.405
168   I         0.172   0.167   0.295   0.177   0.162   0.347  -0.168  -0.193  -0.015
169   S         0.172   0.159   0.289  -0.110  -0.148   0.044  -0.168  -0.208  -0.026
170   D         0.736   0.715   0.485   0.720   0.702   0.356   0.790   0.758   0.345
171   A        -1.261  -1.379  -1.381  -1.099  -1.308  -1.331  -1.006  -1.129  -1.082
172   E         1.481   1.507   1.609   1.383   1.425   1.594   1.627   1.671   1.843
173   L         1.481   1.507   1.609   1.297   1.337   1.511   1.627   1.671   1.843
174   D         1.481   1.507   1.609   1.430   1.478   1.638   1.627   1.671   1.843
175   A         1.481   1.507   1.609   1.469   1.506   1.675   1.627   1.671   1.843
176   E         1.481   1.507   1.609   1.383   1.425   1.594   1.627   1.671   1.843
177   L         1.481   1.507   1.609   1.297   1.337   1.511   1.627   1.671   1.843
178   D         0.369   0.419   0.339   0.180   0.263   0.084   0.191   0.270   0.072
179   A         1.481   1.507   1.609   1.469   1.506   1.675   1.627   1.671   1.843
180   L         1.481   1.507   1.609   1.297   1.337   1.511   1.627   1.671   1.843
181   A        -0.300  -0.443  -0.394  -0.191  -0.430  -0.410  -0.407  -0.591  -0.531
182   Q        -0.446  -0.427  -0.403  -0.784  -0.784  -0.700  -0.647  -0.630  -0.553
183   E         1.481   1.507   1.609   1.383   1.425   1.594   1.627   1.671   1.843
184   -        -1.703  -1.619  -1.458  -1.666  -1.569  -1.314  -1.437  -1.355  -1.150
185   D        -0.300  -0.397  -0.391  -0.416  -0.540  -0.587  -0.407  -0.521  -0.527
186   F        -0.918  -1.004  -0.955  -0.555  -0.658  -0.620  -0.886  -0.974  -0.886
187   T        -0.576  -0.614  -0.475  -0.867  -0.959  -0.746  -0.766  -0.824  -0.639
188   L        -1.606  -1.607  -1.453  -1.607  -1.614  -1.423  -1.351  -1.344  -1.146
189   P        -0.235  -0.224  -0.378  -0.169  -0.150  -0.352  -0.288  -0.274  -0.503
190   T        -0.235  -0.233  -0.376  -0.074  -0.071  -0.369  -0.288  -0.286  -0.501
191   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
192   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
193   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
194   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
195   E        -0.399  -0.256  -0.373  -0.320  -0.087  -0.349  -0.517  -0.320  -0.497
196   N        -1.818  -1.886  -1.782  -1.656  -1.788  -1.647  -1.365  -1.419  -1.258
197   S        -1.818  -1.861  -1.762  -1.685  -1.800  -1.607  -1.365  -1.400  -1.243
198   L        -1.002  -0.989  -0.957  -1.185  -1.162  -1.099  -1.006  -0.982  -0.890
199   G        -0.300  -0.348  -0.399  -0.119  -0.214  -0.311  -0.407  -0.496  -0.543
200   N        -2.290  -2.222  -2.069  -1.872  -1.810  -1.587  -1.604  -1.549  -1.345
201   D        -1.475  -1.371  -1.384  -1.466  -1.314  -1.354  -1.245  -1.127  -1.085
202   M        -1.261  -1.307  -1.359  -0.909  -1.008  -1.157  -1.006  -1.062  -1.061
203   P         1.481   1.507   1.609   1.717   1.754   1.911   1.627   1.671   1.843
204   S         1.481   1.507   1.609   1.462   1.504   1.669   1.627   1.671   1.843
205   Y         0.736   0.771   0.489   1.178   1.229   0.857   0.790   0.843   0.353
206   L         0.736   0.771   0.489   0.662   0.713   0.353   0.790   0.843   0.353
207   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
208   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
209   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
210   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
211   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
212   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
213   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
214   A        -1.475  -1.418  -1.391  -1.523  -1.458  -1.425  -1.245  -1.193  -1.095
215   N        -1.132  -1.019  -0.979  -1.234  -1.018  -0.983  -1.125  -0.989  -0.910
216   A        -1.947  -1.795  -1.772  -2.010  -1.794  -1.759  -1.484  -1.361  -1.252
217   P        -1.002  -0.989  -0.957  -0.975  -0.956  -0.836  -1.006  -0.982  -0.890
218   P         1.481   1.507   1.609   1.717   1.754   1.911   1.627   1.671   1.843
219   A        -1.947  -1.968  -1.778  -1.933  -1.981  -1.721  -1.484  -1.485  -1.256
220   F         1.481   1.507   1.609   1.797   1.835   1.988   1.627   1.671   1.843
221   I         0.110   0.146   0.291   0.065   0.127   0.343  -0.288  -0.235  -0.023
222   D         1.481   1.507   1.609   1.430   1.478   1.638   1.627   1.671   1.843
223   E         0.736   0.776   0.493   0.720   0.780   0.370   0.790   0.850   0.360
224   E        -0.918  -0.733  -0.910  -0.935  -0.670  -0.937  -0.886  -0.662  -0.833
225   P        -0.918  -0.866  -0.937  -0.589  -0.545  -0.644  -0.886  -0.847  -0.867
226   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
227   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
228   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
229   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
230   E        -1.437  -1.433  -1.393  -1.561  -1.566  -1.554  -1.186  -1.185  -1.093
231   D        -0.300  -0.282  -0.375  -0.399  -0.376  -0.489  -0.407  -0.390  -0.505
232   K        -1.585  -1.597  -1.412  -1.449  -1.441  -1.185  -1.343  -1.341  -1.114
233   N        -1.703  -1.662  -1.458  -1.413  -1.343  -1.073  -1.437  -1.391  -1.150
234   K        -0.399  -0.289  -0.394  -0.441  -0.274  -0.462  -0.517  -0.366  -0.526
235   A        -0.505  -0.442  -0.422  -0.493  -0.408  -0.327  -0.718  -0.644  -0.575
236   L        -0.977  -0.921  -0.984  -1.178  -1.099  -1.201  -0.926  -0.862  -0.912
237   E        -0.409  -0.446  -0.385  -0.593  -0.629  -0.554  -0.561  -0.588  -0.515
238   S        -1.604  -1.489  -1.423  -1.439  -1.298  -1.168  -1.365  -1.265  -1.123
239   A         1.481   1.507   1.609   1.469   1.506   1.675   1.627   1.671   1.843
240   Q        -1.475  -1.308  -1.378  -1.434  -1.223  -1.258  -1.245  -1.074  -1.084
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/Q03390
Output conservation file - output/Q03390
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
