1     M         1.430   1.445   1.485   1.706   1.721   1.785   1.533   1.550   1.605
2     S         1.430   1.445   1.485   1.216   1.244   1.302   1.533   1.550   1.605
3     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
4     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
5     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
6     R         1.430   1.445   1.485   1.578   1.597   1.659   1.533   1.550   1.605
7     A         0.196   0.090   0.071   0.430   0.278   0.231   0.100  -0.070  -0.108
8     K         0.196   0.230   0.098   0.189   0.250  -0.046   0.100   0.155  -0.062
9     E         1.430   1.445   1.485   1.463   1.492   1.545   1.533   1.550   1.605
10    L         0.196   0.230   0.098   0.365   0.413   0.201   0.100   0.155  -0.062
11    Q         0.196   0.230   0.098  -0.217  -0.163  -0.330   0.100   0.155  -0.062
12    E         0.196   0.090   0.071   0.103  -0.105  -0.192   0.100  -0.070  -0.108
13    K         1.430   1.445   1.485   0.938   0.965   1.030   1.533   1.550   1.605
14    L        -0.853  -0.869  -0.858  -0.723  -0.756  -0.734  -0.855  -0.871  -0.834
15    N        -0.853  -0.894  -0.870  -0.651  -0.731  -0.698  -0.855  -0.900  -0.850
16    L         1.430   1.445   1.485   1.486   1.511   1.568   1.533   1.550   1.605
17    Q         0.196   0.274   0.116   0.357   0.475   0.225   0.100   0.224  -0.033
18    A         1.430   1.445   1.485   1.594   1.627   1.674   1.533   1.550   1.605
19    K        -0.853  -0.873  -0.861  -1.125  -1.125  -1.068  -0.855  -0.875  -0.838
20    L        -0.853  -0.786  -0.838  -0.568  -0.463  -0.558  -0.855  -0.763  -0.811
21    Q         1.430   1.445   1.485   1.548   1.571   1.629   1.533   1.550   1.605
22    S        -1.614  -1.582  -1.529  -1.758  -1.652  -1.623  -1.333  -1.288  -1.201
23    T        -1.614  -1.582  -1.529  -1.388  -1.308  -1.258  -1.333  -1.288  -1.201
24    F         0.196   0.090   0.071   0.481   0.315   0.273   0.100  -0.070  -0.108
25    S         0.196   0.268   0.116   0.056   0.165  -0.051   0.100   0.215  -0.033
26    N        -0.853  -0.782  -0.841  -0.794  -0.677  -0.799  -0.855  -0.758  -0.815
27    N        -1.614  -1.582  -1.529  -1.527  -1.458  -1.395  -1.333  -1.288  -1.201
28    T        -0.853  -0.873  -0.861  -0.767  -0.807  -0.814  -0.855  -0.875  -0.838
29    A        -0.853  -0.873  -0.861  -0.720  -0.780  -0.762  -0.855  -0.875  -0.838
30    A         0.196   0.230   0.098  -0.200  -0.143  -0.306   0.100   0.155  -0.062
31    V         0.196   0.090   0.071   0.509   0.343   0.299   0.100  -0.070  -0.108
32    L         1.430   1.445   1.485   1.486   1.511   1.568   1.533   1.550   1.605
33    D        -1.614  -1.582  -1.529  -1.509  -1.466  -1.377  -1.333  -1.288  -1.201
34    W         1.430   1.445   1.485   1.824   1.847   1.901   1.533   1.550   1.605
35    L         0.196   0.274   0.116   0.320   0.435   0.199   0.100   0.224  -0.033
36    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
37    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
38    K        -0.853  -0.894  -0.870  -0.965  -1.019  -1.041  -0.855  -0.900  -0.850
39    E        -1.614  -1.582  -1.529  -1.228  -1.150  -1.101  -1.333  -1.288  -1.201
40    S        -0.092  -0.073  -0.020  -0.370  -0.344  -0.245  -0.377  -0.345  -0.262
41    D        -0.853  -0.894  -0.870  -1.234  -1.282  -1.200  -0.855  -0.900  -0.850
42    E         0.196   0.274   0.116   0.305   0.426   0.188   0.100   0.224  -0.033
43    T        -0.853  -0.894  -0.870  -0.901  -0.943  -0.887  -0.855  -0.900  -0.850
44    G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
45    I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
46    S         0.033   0.050   0.022  -0.173  -0.144  -0.170  -0.165  -0.137  -0.191
47    N         0.033   0.050   0.022   0.054   0.085  -0.019  -0.165  -0.137  -0.191
48    D         0.033   0.050   0.022   0.059   0.084   0.042  -0.165  -0.137  -0.191
49    T         0.033   0.022   0.012   0.059   0.038   0.021  -0.165  -0.183  -0.207
50    E        -0.982  -0.967  -0.903  -0.877  -0.860  -0.756  -1.014  -0.986  -0.889
51    R        -0.982  -0.967  -0.903  -1.261  -1.219  -1.133  -1.014  -0.986  -0.889
52    N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
53    K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
54    Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
55    L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
56    K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
57    D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
58    H        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
59    K        -1.614  -1.582  -1.529  -1.563  -1.471  -1.431  -1.333  -1.288  -1.201
60    E        -0.853  -0.869  -0.858  -0.658  -0.655  -0.652  -0.855  -0.871  -0.834
61    L        -0.853  -0.869  -0.858  -0.870  -0.892  -0.906  -0.855  -0.871  -0.834
62    E        -0.853  -0.894  -0.870  -0.750  -0.845  -0.790  -0.855  -0.900  -0.850
63    D        -0.853  -0.894  -0.870  -1.009  -1.137  -1.095  -0.855  -0.900  -0.850
64    G        -0.853  -0.894  -0.870  -0.929  -0.977  -0.921  -0.855  -0.900  -0.850
65    K         1.430   1.445   1.485   0.938   0.965   1.030   1.533   1.550   1.605
66    K         0.196   0.090   0.071  -0.234  -0.391  -0.391   0.100  -0.070  -0.108
67    A        -1.614  -1.582  -1.529  -1.540  -1.512  -1.408  -1.333  -1.288  -1.201
68    F         1.430   1.445   1.485   1.654   1.678   1.734   1.533   1.550   1.605
69    F         1.430   1.445   1.485   1.654   1.678   1.734   1.533   1.550   1.605
70    K        -0.853  -0.894  -0.870  -0.908  -0.995  -0.998  -0.855  -0.900  -0.850
71    L         1.430   1.445   1.485   1.486   1.511   1.568   1.533   1.550   1.605
72    P         1.430   1.445   1.485   1.773   1.792   1.851   1.533   1.550   1.605
73    V         0.196   0.090   0.071   0.509   0.343   0.299   0.100  -0.070  -0.108
74    L        -0.853  -0.786  -0.838  -0.596  -0.503  -0.574  -0.855  -0.763  -0.811
75    Q         0.196   0.090   0.071   0.450   0.306   0.285   0.100  -0.070  -0.108
76    I        -0.853  -0.873  -0.861  -0.571  -0.615  -0.577  -0.855  -0.875  -0.838
77    G         1.430   1.445   1.485   1.609   1.635   1.689   1.533   1.550   1.605
78    S         1.430   1.445   1.485   1.216   1.244   1.302   1.533   1.550   1.605
79    G         1.430   1.445   1.485   1.609   1.635   1.689   1.533   1.550   1.605
80    L         1.430   1.445   1.485   1.486   1.511   1.568   1.533   1.550   1.605
81    H         0.196   0.230   0.098   0.127   0.180   0.023   0.100   0.155  -0.062
82    F         0.196   0.090   0.071   0.464   0.284   0.247   0.100  -0.070  -0.108
83    R        -1.614  -1.582  -1.529  -1.313  -1.263  -1.184  -1.333  -1.288  -1.201
84    T        -0.982  -0.963  -0.903  -0.798  -0.782  -0.679  -1.014  -0.981  -0.889
85    Q        -0.982  -0.963  -0.903  -1.264  -1.269  -1.137  -1.014  -0.981  -0.889
86    D         0.033   0.066   0.040  -0.165  -0.112  -0.156  -0.165  -0.110  -0.159
87    D         0.196   0.230   0.098   0.303   0.328   0.139   0.100   0.155  -0.062
88    A         0.033   0.050   0.022   0.161   0.186   0.141  -0.165  -0.137  -0.191
89    S        -0.982  -0.967  -0.903  -1.049  -1.033  -0.925  -1.014  -0.986  -0.889
90    A        -0.982  -0.967  -0.903  -1.042  -1.008  -0.918  -1.014  -0.986  -0.889
91    K         0.033   0.022   0.012  -0.138  -0.178  -0.263  -0.165  -0.183  -0.207
92    E         0.033   0.022   0.012  -0.022  -0.045  -0.074  -0.165  -0.183  -0.207
93    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
94    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
95    D         1.430   1.445   1.485   1.450   1.472   1.533   1.533   1.550   1.605
96    I         1.430   1.445   1.485   1.583   1.609   1.664   1.533   1.550   1.605
97    H         0.196   0.090   0.071   0.580   0.413   0.367   0.100  -0.070  -0.108
98    T         0.196   0.090   0.071   0.391   0.218   0.181   0.100  -0.070  -0.108
99    I         1.430   1.445   1.485   1.556   1.573   1.637   1.533   1.550   1.605
100   G         1.430   1.445   1.485   1.609   1.635   1.689   1.533   1.550   1.605
101   E         0.196   0.090   0.071   0.265   0.103   0.056   0.100  -0.070  -0.108
102   F         1.430   1.445   1.485   1.654   1.678   1.734   1.533   1.550   1.605
103   I         1.430   1.445   1.485   1.556   1.573   1.637   1.533   1.550   1.605
104   E        -0.853  -0.894  -0.870  -1.230  -1.275  -1.195  -0.855  -0.900  -0.850
105   G         0.196   0.230   0.098   0.077   0.133  -0.047   0.100   0.155  -0.062
106   D         1.430   1.445   1.485   1.455   1.478   1.538   1.533   1.550   1.605
107   K         0.196   0.090   0.071  -0.248  -0.393  -0.413   0.100  -0.070  -0.108
108   K         1.430   1.445   1.485   0.927   0.947   1.018   1.533   1.550   1.605
109   V         1.430   1.445   1.485   1.683   1.708   1.762   1.533   1.550   1.605
110   S         1.430   1.445   1.485   1.195   1.223   1.282   1.533   1.550   1.605
111   S         1.430   1.445   1.485   1.195   1.223   1.282   1.533   1.550   1.605
112   L         1.430   1.445   1.485   1.471   1.491   1.553   1.533   1.550   1.605
113   A         1.430   1.445   1.485   1.543   1.564   1.624   1.533   1.550   1.605
114   K         0.196   0.090   0.071  -0.205  -0.338  -0.348   0.100  -0.070  -0.108
115   K         1.430   1.445   1.485   0.938   0.965   1.030   1.533   1.550   1.605
116   K         0.196   0.090   0.071  -0.177  -0.305  -0.306   0.100  -0.070  -0.108
117   K         0.196   0.274   0.116  -0.205  -0.095  -0.291   0.100   0.224  -0.033
118   R        -1.614  -1.582  -1.529  -1.568  -1.485  -1.435  -1.333  -1.288  -1.201
119   S        -1.614  -1.582  -1.529  -1.465  -1.417  -1.334  -1.333  -1.288  -1.201
120   D        -1.614  -1.582  -1.529  -1.724  -1.623  -1.589  -1.333  -1.288  -1.201
121   P        -0.853  -0.786  -0.838  -0.651  -0.553  -0.618  -0.855  -0.763  -0.811
122   G        -0.853  -0.755  -0.832  -0.508  -0.360  -0.475  -0.855  -0.723  -0.802
123   L        -1.614  -1.582  -1.529  -1.272  -1.253  -1.144  -1.333  -1.288  -1.201
124   Q        -0.092  -0.073  -0.020   0.052   0.092   0.166  -0.377  -0.345  -0.262
125   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
126   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
127   R         0.196   0.090   0.071   0.303   0.108   0.046   0.100  -0.070  -0.108
128   N         0.196   0.268   0.116   0.303   0.385   0.169   0.100   0.215  -0.033
129   N        -0.853  -0.894  -0.870  -0.983  -1.050  -0.986  -0.855  -0.900  -0.850
130   M         0.033   0.022   0.012   0.247   0.234   0.221  -0.165  -0.183  -0.207
131   Y         0.033   0.022   0.012   0.426   0.412   0.393  -0.165  -0.183  -0.207
132   R         0.196   0.090   0.071   0.391   0.209   0.181   0.100  -0.070  -0.108
133   I        -0.853  -0.869  -0.858  -0.596  -0.641  -0.602  -0.855  -0.871  -0.834
134   T        -0.853  -0.786  -0.838  -0.733  -0.615  -0.730  -0.855  -0.763  -0.811
135   K         1.430   1.445   1.485   0.938   0.965   1.030   1.533   1.550   1.605
136   D         0.196   0.090   0.071   0.298   0.144   0.110   0.100  -0.070  -0.108
137   D         0.196   0.090   0.071   0.273   0.097   0.072   0.100  -0.070  -0.108
138   T        -0.092  -0.074  -0.020  -0.311  -0.290  -0.206  -0.377  -0.346  -0.262
139   K         0.196   0.274   0.116  -0.217  -0.104  -0.306   0.100   0.224  -0.033
140   A         0.196   0.090   0.071   0.493   0.358   0.324   0.100  -0.070  -0.108
141   M         1.430   1.445   1.485   1.706   1.721   1.785   1.533   1.550   1.605
142   I        -0.853  -0.869  -0.858  -0.505  -0.533  -0.497  -0.855  -0.871  -0.834
143   A         0.196   0.274   0.116   0.318   0.458   0.153   0.100   0.224  -0.033
144   L         1.430   1.445   1.485   1.486   1.511   1.568   1.533   1.550   1.605
145   K         0.196   0.090   0.071  -0.157  -0.284  -0.276   0.100  -0.070  -0.108
146   R        -0.853  -0.782  -0.841  -0.574  -0.505  -0.544  -0.855  -0.758  -0.815
147   K         1.430   1.445   1.485   0.938   0.965   1.030   1.533   1.550   1.605
148   M         0.196   0.274   0.116   0.531   0.638   0.397   0.100   0.224  -0.033
149   R         1.430   1.445   1.485   1.578   1.597   1.659   1.533   1.550   1.605
150   K        -0.092  -0.074  -0.020  -0.572  -0.536  -0.436  -0.377  -0.346  -0.262
151   G        -0.853  -0.782  -0.841  -0.584  -0.470  -0.568  -0.855  -0.758  -0.815
152   E        -0.092  -0.073  -0.020  -0.190  -0.175  -0.075  -0.377  -0.345  -0.262
153   K         0.196   0.230   0.098   0.219   0.277  -0.017   0.100   0.155  -0.062
154   E        -0.853  -0.869  -0.858  -0.747  -0.779  -0.756  -0.855  -0.871  -0.834
155   G        -0.853  -0.786  -0.838  -1.155  -1.081  -1.089  -0.855  -0.763  -0.811
156   L        -0.853  -0.894  -0.870  -0.596  -0.652  -0.621  -0.855  -0.900  -0.850
157   R         0.196   0.090   0.071   0.219  -0.001  -0.083   0.100  -0.070  -0.108
158   K         0.196   0.274   0.116  -0.234  -0.128  -0.329   0.100   0.224  -0.033
159   K        -0.853  -0.869  -0.858  -1.190  -1.183  -1.142  -0.855  -0.871  -0.834
160   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
161   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
162   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
163   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
164   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
165   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
166   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
167   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
168   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
169   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
170   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
171   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
172   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
173   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
174   Q         0.033  -0.004   0.022   0.177   0.120   0.162  -0.165  -0.227  -0.191
175   E        -0.982  -0.962  -0.903  -0.607  -0.568  -0.490  -1.014  -0.979  -0.889
176   H        -0.982  -0.962  -0.903  -0.528  -0.506  -0.413  -1.014  -0.979  -0.889
177   S         0.033   0.085   0.050  -0.158  -0.076  -0.119  -0.165  -0.077  -0.143
178   K         0.196   0.268   0.116  -0.339  -0.218  -0.472   0.100   0.215  -0.033
179   S         0.196   0.268   0.116   0.066   0.176  -0.036   0.100   0.215  -0.033
180   S        -1.614  -1.582  -1.529  -1.861  -1.876  -1.723  -1.333  -1.288  -1.201
181   V        -0.092  -0.068  -0.015  -0.230  -0.151  -0.078  -0.377  -0.336  -0.253
182   S        -0.853  -0.873  -0.861  -1.183  -1.273  -1.210  -0.855  -0.875  -0.838
183   N        -1.614  -1.582  -1.529  -1.200  -1.180  -1.074  -1.333  -1.288  -1.201
184   S        -0.853  -0.873  -0.861  -0.940  -0.967  -0.924  -0.855  -0.875  -0.838
185   Y         0.196   0.230   0.098   0.379   0.428   0.267   0.100   0.155  -0.062
186   S         0.196   0.090   0.071   0.066  -0.075  -0.101   0.100  -0.070  -0.108
187   A        -1.614  -1.582  -1.529  -1.518  -1.463  -1.386  -1.333  -1.288  -1.201
188   S         0.196   0.090   0.071   0.058  -0.090  -0.113   0.100  -0.070  -0.108
189   D         1.430   1.445   1.485   1.455   1.478   1.538   1.533   1.550   1.605
190   E        -0.853  -0.873  -0.861  -0.767  -0.811  -0.784  -0.855  -0.875  -0.838
191   E         0.033  -0.004   0.022  -0.103  -0.181  -0.164  -0.165  -0.227  -0.191
192   D         1.430   1.445   1.485   1.461   1.484   1.544   1.533   1.550   1.605
193   E        -0.982  -0.962  -0.903  -0.995  -0.989  -0.872  -1.014  -0.979  -0.889
194   D        -0.092  -0.068  -0.015  -0.224  -0.179  -0.100  -0.377  -0.336  -0.253
195   A        -0.853  -0.894  -0.870  -0.462  -0.547  -0.521  -0.855  -0.900  -0.850
196   G        -0.853  -0.894  -0.870  -1.175  -1.205  -1.130  -0.855  -0.900  -0.850
197   T        -0.853  -0.894  -0.870  -0.444  -0.503  -0.474  -0.855  -0.900  -0.850
198   M        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
199   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
200   P        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
201   Q        -0.853  -0.873  -0.861  -0.690  -0.741  -0.715  -0.855  -0.875  -0.838
202   K        -0.853  -0.873  -0.861  -1.144  -1.150  -1.090  -0.855  -0.875  -0.838
203   S        -0.853  -0.755  -0.832  -0.811  -0.685  -0.749  -0.855  -0.723  -0.802
204   T        -1.614  -1.582  -1.529  -1.709  -1.577  -1.574  -1.333  -1.288  -1.201
205   K         1.430   1.445   1.485   0.938   0.965   1.030   1.533   1.550   1.605
206   K         1.430   1.445   1.485   0.938   0.965   1.030   1.533   1.550   1.605
207   K        -1.614  -1.582  -1.529  -1.558  -1.484  -1.426  -1.333  -1.288  -1.201
208   F        -0.853  -0.873  -0.861  -0.677  -0.751  -0.727  -0.855  -0.875  -0.838
209   G         0.196   0.090   0.071   0.421   0.244   0.208   0.100  -0.070  -0.108
210   L         1.430   1.445   1.485   1.486   1.511   1.568   1.533   1.550   1.605
211   L         1.430   1.445   1.485   1.486   1.511   1.568   1.533   1.550   1.605
212   F         1.430   1.445   1.485   1.654   1.678   1.734   1.533   1.550   1.605
213   D        -1.614  -1.582  -1.529  -1.341  -1.295  -1.213  -1.333  -1.288  -1.201
214   K        -0.853  -0.894  -0.870  -0.980  -1.084  -1.108  -0.855  -0.900  -0.850
215   K         1.430   1.445   1.485   0.938   0.965   1.030   1.533   1.550   1.605
216   K         0.196   0.090   0.071  -0.214  -0.355  -0.361   0.100  -0.070  -0.108
217   K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
218   A        -0.982  -0.962  -0.903  -1.400  -1.387  -1.270  -1.014  -0.979  -0.889
219   R         0.196   0.230   0.098  -0.205  -0.154  -0.314   0.100   0.155  -0.062
220   K        -0.092  -0.074  -0.020  -0.510  -0.450  -0.372  -0.377  -0.346  -0.262
221   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
222   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/P53317
Output conservation file - output/P53317
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
