1     M         1.792   1.796   1.895   2.043   2.053   2.208   1.983   1.989   2.148
2     S         0.418   0.422   0.516  -0.101  -0.089   0.049   0.034   0.041   0.174
3     A        -0.849  -0.828  -0.811  -1.092  -1.045  -1.029  -0.824  -0.800  -0.757
4     K        -1.302  -1.295  -1.265  -0.950  -0.946  -0.895  -1.049  -1.042  -0.973
5     P        -0.849  -0.835  -0.811  -0.491  -0.474  -0.411  -0.824  -0.807  -0.757
6     A        -1.398  -1.396  -1.308  -1.444  -1.444  -1.303  -1.136  -1.131  -1.010
7     T        -0.956  -0.953  -0.864  -1.139  -1.144  -0.995  -0.941  -0.936  -0.813
8     D        -0.956  -0.953  -0.864  -0.783  -0.786  -0.637  -0.941  -0.936  -0.813
9     D        -0.956  -0.953  -0.864  -0.535  -0.532  -0.387  -0.941  -0.936  -0.813
10    A        -1.398  -1.391  -1.308  -1.375  -1.349  -1.233  -1.136  -1.127  -1.010
11    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
12    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
13    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
14    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
15    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
16    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
17    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
18    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
19    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
20    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
21    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
22    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
23    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
24    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
25    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
26    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
27    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
28    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
29    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
30    K        -0.269  -0.295  -0.250  -0.094  -0.134  -0.059  -0.454  -0.490  -0.428
31    D        -0.956  -0.950  -0.864  -0.751  -0.748  -0.605  -0.941  -0.933  -0.813
32    E         0.677   0.647   0.640   0.987   0.937   0.909   0.521   0.465   0.416
33    L        -0.269  -0.277  -0.233  -0.726  -0.745  -0.700  -0.454  -0.465  -0.403
34    L         0.677   0.647   0.640   0.479   0.434   0.426   0.521   0.465   0.416
35    S        -0.299  -0.301  -0.254  -0.474  -0.467  -0.376  -0.512  -0.512  -0.437
36    P        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
37    F        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
38    R        -1.760  -1.754  -1.670  -1.460  -1.434  -1.319  -1.266  -1.259  -1.142
39    R        -1.302  -1.295  -1.265  -1.024  -1.020  -0.921  -1.049  -1.042  -0.973
40    L        -0.844  -0.856  -0.802  -0.954  -0.952  -0.882  -0.833  -0.842  -0.752
41    Y        -0.671  -0.699  -0.765  -0.202  -0.237  -0.311  -0.616  -0.649  -0.705
42    A        -0.844  -0.848  -0.815  -0.506  -0.509  -0.476  -0.833  -0.834  -0.765
43    L         0.899   0.889   0.742   0.775   0.763   0.591   0.900   0.884   0.605
44    T        -0.844  -0.850  -0.806  -1.044  -1.065  -0.990  -0.833  -0.837  -0.756
45    R        -1.302  -1.278  -1.261  -0.941  -0.890  -0.881  -1.049  -1.026  -0.970
46    T         0.899   0.882   0.733   0.953   0.929   0.678   0.900   0.872   0.590
47    P         1.792   1.796   1.895   1.926   1.932   2.090   1.983   1.989   2.148
48    Y         0.899   0.882   0.733   1.207   1.188   0.981   0.900   0.872   0.590
49    P         0.899   0.889   0.742   1.039   1.024   0.761   0.900   0.884   0.605
50    A         1.792   1.796   1.895   1.609   1.618   1.771   1.983   1.989   2.148
51    L        -0.671  -0.638  -0.745  -0.428  -0.379  -0.615  -0.616  -0.576  -0.682
52    A        -1.302  -1.288  -1.249  -1.360  -1.347  -1.266  -1.049  -1.035  -0.959
53    N        -0.671  -0.699  -0.765  -0.410  -0.455  -0.585  -0.616  -0.649  -0.705
54    A        -0.213  -0.215  -0.206  -0.587  -0.593  -0.596  -0.400  -0.403  -0.374
55    A        -0.213  -0.184  -0.201  -0.661  -0.619  -0.665  -0.400  -0.371  -0.370
56    L        -1.302  -1.278  -1.261  -1.482  -1.441  -1.404  -1.049  -1.026  -0.970
57    L         1.792   1.796   1.895   1.549   1.556   1.710   1.983   1.989   2.148
58    A        -0.671  -0.689  -0.750  -0.809  -0.833  -0.912  -0.616  -0.636  -0.688
59    S        -1.302  -1.305  -1.262  -1.534  -1.546  -1.475  -1.049  -1.050  -0.971
60    T         0.530   0.532   0.552   0.461   0.462   0.486   0.250   0.253   0.246
61    P        -0.213  -0.240  -0.222  -0.372  -0.425  -0.437  -0.400  -0.431  -0.396
62    V        -0.671  -0.670  -0.730  -0.447  -0.456  -0.554  -0.616  -0.615  -0.665
63    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
64    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
65    L        -0.299  -0.293  -0.250  -0.440  -0.432  -0.386  -0.512  -0.504  -0.432
66    S        -0.092  -0.116  -0.183  -0.201  -0.234  -0.329  -0.200  -0.234  -0.333
67    P        -0.092  -0.116  -0.183   0.106   0.067  -0.047  -0.200  -0.234  -0.333
68    S        -1.398  -1.392  -1.308  -1.375  -1.386  -1.233  -1.136  -1.128  -1.010
69    F        -0.269  -0.232  -0.237  -0.129  -0.075  -0.077  -0.454  -0.401  -0.409
70    K        -0.956  -0.950  -0.864  -0.934  -0.911  -0.789  -0.941  -0.933  -0.813
71    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
72    V         0.458   0.457   0.522   0.130   0.128   0.244   0.112   0.108   0.187
73    P        -1.398  -1.391  -1.308  -1.258  -1.249  -1.116  -1.136  -1.127  -1.010
74    P        -0.849  -0.862  -0.811  -1.042  -1.048  -0.972  -0.824  -0.838  -0.757
75    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
76    T         0.899   0.963   0.749   1.029   1.111   0.839   0.900   1.003   0.618
77    Q        -0.299  -0.260  -0.249  -0.358  -0.306  -0.281  -0.512  -0.467  -0.431
78    S        -0.299  -0.309  -0.246  -0.639  -0.650  -0.557  -0.512  -0.521  -0.427
79    P        -0.092  -0.116  -0.183  -0.008  -0.048  -0.209  -0.200  -0.234  -0.333
80    A        -0.299  -0.311  -0.251  -0.657  -0.665  -0.560  -0.512  -0.524  -0.434
81    L        -0.092  -0.088  -0.156  -0.400  -0.394  -0.557  -0.200  -0.194  -0.293
82    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
83    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
84    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
85    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
86    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
87    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
88    S        -0.299  -0.259  -0.237  -0.677  -0.627  -0.565  -0.512  -0.466  -0.417
89    I        -1.398  -1.392  -1.308  -1.139  -1.130  -0.995  -1.136  -1.128  -1.010
90    P        -0.092  -0.028  -0.153   0.149   0.243   0.052  -0.200  -0.110  -0.289
91    M        -0.849  -0.863  -0.811  -0.834  -0.845  -0.735  -0.824  -0.838  -0.757
92    S         0.800   0.773   0.695   0.616   0.574   0.423   0.735   0.689   0.518
93    R        -0.299  -0.298  -0.241  -0.067  -0.063   0.038  -0.512  -0.509  -0.421
94    V        -1.398  -1.392  -1.308  -1.005  -0.999  -0.860  -1.136  -1.128  -1.010
95    F        -0.849  -0.860  -0.822  -1.051  -1.068  -1.004  -0.824  -0.836  -0.768
96    S         0.458   0.444   0.525  -0.028  -0.056   0.055   0.112   0.083   0.193
97    K        -1.398  -1.392  -1.308  -1.233  -1.233  -1.090  -1.136  -1.128  -1.010
98    S        -1.302  -1.305  -1.254  -1.340  -1.349  -1.257  -1.049  -1.051  -0.963
99    S        -0.386  -0.381  -0.288  -0.466  -0.447  -0.301  -0.616  -0.609  -0.480
100   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
101   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
102   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
103   I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
104   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
105   I         0.899   0.905   0.734   1.128   1.137   0.906   0.900   0.910   0.592
106   T         0.530   0.568   0.567   0.321   0.398   0.342   0.250   0.321   0.275
107   T        -0.844  -0.812  -0.810  -0.602  -0.563  -0.540  -0.833  -0.801  -0.760
108   K        -0.213  -0.202  -0.211  -0.457  -0.446  -0.434  -0.400  -0.379  -0.380
109   T        -0.671  -0.633  -0.748  -0.899  -0.830  -1.080  -0.616  -0.570  -0.686
110   A        -0.213  -0.202  -0.211  -0.148  -0.110  -0.181  -0.400  -0.379  -0.380
111   L        -0.844  -0.832  -0.811  -1.008  -1.013  -0.943  -0.833  -0.821  -0.761
112   F        -1.302  -1.295  -1.265  -1.279  -1.265  -1.232  -1.049  -1.042  -0.973
113   F         1.792   1.796   1.895   1.913   1.918   2.077   1.983   1.989   2.148
114   S         0.899   0.905   0.734   0.816   0.826   0.545   0.900   0.910   0.592
115   T        -0.844  -0.831  -0.807  -1.283  -1.269  -1.227  -0.833  -0.818  -0.758
116   M         0.072   0.040  -0.095   0.059   0.018  -0.148   0.034  -0.011  -0.206
117   Q        -1.302  -1.323  -1.276  -0.839  -0.881  -0.804  -1.049  -1.067  -0.983
118   A         0.418   0.422   0.516  -0.190  -0.180  -0.040   0.034   0.041   0.174
119   I        -0.213  -0.242  -0.210  -0.492  -0.535  -0.485  -0.400  -0.434  -0.380
120   G         1.792   1.796   1.895   1.682   1.689   1.844   1.983   1.989   2.148
121   A         0.418   0.422   0.516  -0.086  -0.078   0.064   0.034   0.040   0.174
122   Y        -0.213  -0.220  -0.212   0.026   0.016   0.040  -0.400  -0.407  -0.383
123   M         0.530   0.568   0.567   0.684   0.751   0.727   0.250   0.321   0.275
124   I         0.530   0.507   0.551   0.667   0.628   0.688   0.250   0.205   0.244
125   Y         0.072   0.090  -0.076   0.337   0.353   0.082   0.034   0.057  -0.179
126   D         1.792   1.796   1.895   2.086   2.094   2.251   1.983   1.989   2.148
127   N         0.800   0.808   0.696   0.737   0.746   0.595   0.735   0.749   0.521
128   D         1.792   1.796   1.895   2.086   2.094   2.251   1.983   1.989   2.148
129   L         0.072   0.021  -0.097  -0.015  -0.084  -0.228   0.034  -0.039  -0.209
130   E        -0.671  -0.699  -0.765  -0.312  -0.359  -0.516  -0.616  -0.649  -0.705
131   N         0.899   0.889   0.742   1.123   1.113   0.860   0.900   0.884   0.605
132   G         0.899   0.882   0.733   0.805   0.781   0.524   0.900   0.872   0.590
133   A         0.072   0.047  -0.101  -0.074  -0.112  -0.363   0.034  -0.002  -0.214
134   G         1.792   1.796   1.895   1.682   1.689   1.844   1.983   1.989   2.148
135   F         1.792   1.796   1.895   1.913   1.918   2.077   1.983   1.989   2.148
136   I        -1.302  -1.295  -1.265  -1.087  -1.087  -1.046  -1.049  -1.042  -0.973
137   A        -0.844  -0.832  -0.811  -1.032  -1.024  -0.983  -0.833  -0.821  -0.761
138   T         0.899   0.905   0.734   0.775   0.786   0.531   0.900   0.910   0.592
139   W         1.792   1.796   1.895   2.098   2.106   2.263   1.983   1.989   2.148
140   S         0.899   0.889   0.742   0.863   0.856   0.659   0.900   0.884   0.605
141   A        -0.671  -0.694  -0.739  -0.764  -0.793  -0.860  -0.616  -0.643  -0.675
142   L         1.792   1.796   1.895   1.549   1.556   1.710   1.983   1.989   2.148
143   Y         1.792   1.796   1.895   2.006   2.016   2.171   1.983   1.989   2.148
144   L         0.899   0.963   0.749   0.762   0.843   0.580   0.900   1.003   0.618
145   I         0.530   0.510   0.564   0.449   0.399   0.444   0.250   0.210   0.269
146   V         0.899   0.859   0.746   1.069   1.012   0.807   0.900   0.834   0.612
147   G        -0.213  -0.170  -0.212  -0.285  -0.216  -0.315  -0.400  -0.350  -0.383
148   G         1.792   1.796   1.895   1.682   1.689   1.844   1.983   1.989   2.148
149   K        -0.213  -0.226  -0.206  -0.133  -0.156  -0.107  -0.400  -0.416  -0.374
150   K        -1.302  -1.317  -1.271  -1.143  -1.150  -1.060  -1.049  -1.061  -0.978
151   S         1.792   1.796   1.895   1.662   1.673   1.824   1.983   1.989   2.148
152   F         0.072   0.060  -0.103   0.365   0.350   0.114   0.034   0.017  -0.218
153   S        -0.213  -0.243  -0.209  -0.274  -0.326  -0.293  -0.400  -0.436  -0.381
154   A        -0.671  -0.699  -0.765  -0.845  -0.884  -1.010  -0.616  -0.649  -0.705
155   L         0.072   0.021  -0.097  -0.019  -0.089  -0.234   0.034  -0.039  -0.209
156   R         0.072   0.073  -0.109   0.392   0.394   0.102   0.034   0.035  -0.225
157   Y        -0.092  -0.116  -0.183   0.066   0.027  -0.128  -0.200  -0.234  -0.333
158   G         1.792   1.796   1.895   1.668   1.671   1.830   1.983   1.989   2.148
159   R         0.530   0.510   0.564   0.642   0.605   0.678   0.250   0.210   0.269
160   T        -1.302  -1.317  -1.271  -1.130  -1.151  -1.097  -1.049  -1.061  -0.978
161   W         0.072   0.073  -0.109   0.486   0.486   0.200   0.034   0.035  -0.225
162   P         1.792   1.796   1.895   1.926   1.932   2.090   1.983   1.989   2.148
163   L         0.899   0.920   0.745   0.754   0.782   0.561   0.900   0.934   0.611
164   V        -0.844  -0.812  -0.810  -1.229  -1.183  -1.166  -0.833  -0.801  -0.760
165   L         1.792   1.796   1.895   1.549   1.556   1.710   1.983   1.989   2.148
166   S         0.072   0.047  -0.101  -0.015  -0.052  -0.304   0.034  -0.002  -0.214
167   S        -1.302  -1.317  -1.271  -1.117  -1.135  -1.058  -1.049  -1.061  -0.978
168   V         0.530   0.529   0.558   0.205   0.203   0.252   0.250   0.247   0.257
169   S         0.530   0.529   0.558   0.123   0.122   0.133   0.250   0.247   0.257
170   L         0.072   0.027  -0.085  -0.115  -0.181  -0.364   0.034  -0.030  -0.192
171   A        -0.844  -0.846  -0.810  -1.154  -1.153  -1.097  -0.833  -0.832  -0.760
172   N         0.899   0.889   0.742   1.123   1.113   0.860   0.900   0.884   0.605
173   A        -0.213  -0.188  -0.212  -0.455  -0.418  -0.427  -0.400  -0.363  -0.384
174   V        -0.213  -0.202  -0.211  -0.415  -0.400  -0.423  -0.400  -0.379  -0.380
175   L         0.899   0.920   0.745   0.762   0.790   0.575   0.900   0.934   0.611
176   Y         1.792   1.796   1.895   2.006   2.016   2.171   1.983   1.989   2.148
177   G         1.792   1.796   1.895   1.682   1.689   1.844   1.983   1.989   2.148
178   Q        -0.671  -0.684  -0.738  -0.334  -0.362  -0.448  -0.616  -0.630  -0.674
179   R        -0.844  -0.867  -0.809  -0.552  -0.585  -0.481  -0.833  -0.852  -0.759
180   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
181   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
182   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
183   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
184   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
185   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
186   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
187   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
188   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
189   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
190   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
191   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
192   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
193   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
194   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
195   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
196   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
197   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
198   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
199   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
200   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
201   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
202   F         1.792   1.796   1.895   1.913   1.918   2.077   1.983   1.989   2.148
203   L         0.418   0.422   0.516   0.049   0.061   0.209   0.034   0.040   0.176
204   A        -0.844  -0.846  -0.807  -0.637  -0.639  -0.584  -0.833  -0.832  -0.758
205   T        -0.849  -0.846  -0.811  -0.878  -0.871  -0.802  -0.824  -0.820  -0.757
206   G        -0.849  -0.788  -0.807  -0.615  -0.527  -0.551  -0.824  -0.753  -0.753
207   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
208   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
209   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
210   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
211   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
212   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
213   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
214   F        -0.092  -0.111  -0.157   0.128   0.093   0.038  -0.200  -0.227  -0.294
215   Q        -0.844  -0.831  -0.807  -0.512  -0.502  -0.415  -0.833  -0.818  -0.758
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/P40502
Output conservation file - output/P40502
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
