1     M         1.653   1.672   1.749   1.978   2.005   2.124   1.826   1.852   1.973
2     N         0.437   0.504   0.503   0.260   0.365   0.364   0.154   0.274   0.234
3     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
4     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
5     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
6     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
7     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
8     -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
9     G        -0.279  -0.261  -0.274  -0.514  -0.494  -0.504  -0.473  -0.460  -0.451
10    L        -0.887  -0.913  -0.852  -1.026  -1.056  -0.970  -0.891  -0.908  -0.813
11    V        -0.279  -0.346  -0.287  -0.449  -0.562  -0.477  -0.473  -0.549  -0.467
12    L         0.437   0.404   0.452   0.153   0.095   0.168   0.154   0.085   0.136
13    G         1.653   1.672   1.749   1.559   1.586   1.709   1.826   1.852   1.973
14    A         0.437   0.404   0.452   0.125   0.048   0.110   0.154   0.085   0.136
15    T         1.653   1.672   1.749   1.740   1.759   1.888   1.826   1.852   1.973
16    G         1.653   1.672   1.749   1.559   1.586   1.709   1.826   1.852   1.973
17    L         1.653   1.672   1.749   1.518   1.546   1.668   1.826   1.852   1.973
18    C         0.329   0.349   0.434   0.286   0.302   0.436  -0.055  -0.021   0.101
19    G         1.653   1.672   1.749   1.559   1.586   1.709   1.826   1.852   1.973
20    G        -0.720  -0.652  -0.759  -0.850  -0.736  -0.930  -0.682  -0.594  -0.705
21    G        -0.887  -0.823  -0.837  -0.720  -0.603  -0.660  -0.891  -0.821  -0.798
22    F        -0.445  -0.425  -0.340  -0.643  -0.605  -0.480  -0.682  -0.650  -0.533
23    L         0.792   0.802   0.652   0.691   0.708   0.478   0.781   0.794   0.514
24    R        -0.004  -0.054  -0.169   0.023  -0.065  -0.238  -0.055  -0.131  -0.292
25    H        -1.328  -1.309  -1.283  -1.153  -1.140  -1.058  -1.100  -1.075  -1.011
26    A         0.792   0.684   0.628   0.716   0.545   0.436   0.781   0.596   0.471
27    Q        -1.769  -1.749  -1.662  -1.830  -1.819  -1.657  -1.309  -1.283  -1.164
28    E        -1.328  -1.333  -1.274  -1.274  -1.293  -1.193  -1.100  -1.097  -1.003
29    A        -0.004   0.108  -0.134  -0.027   0.134  -0.225  -0.055   0.107  -0.241
30    P        -0.720  -0.642  -0.758  -0.417  -0.290  -0.483  -0.682  -0.582  -0.704
31    Q        -1.328  -1.313  -1.268  -1.388  -1.361  -1.283  -1.100  -1.079  -0.997
32    F        -0.004  -0.101  -0.184   0.258   0.112  -0.038  -0.055  -0.194  -0.313
33    S        -0.887  -0.849  -0.832  -1.003  -0.954  -0.907  -0.891  -0.846  -0.794
34    K        -0.279  -0.286  -0.284  -0.505  -0.533  -0.513  -0.473  -0.488  -0.464
35    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
36    V         0.792   0.802   0.652   0.849   0.864   0.642   0.781   0.794   0.514
37    Y        -0.720  -0.786  -0.813  -0.298  -0.392  -0.434  -0.682  -0.756  -0.767
38    A        -0.279  -0.218  -0.256  -0.461  -0.346  -0.428  -0.473  -0.381  -0.422
39    I        -0.004   0.013  -0.156   0.074   0.102  -0.203  -0.055  -0.028  -0.273
40    L        -0.279  -0.216  -0.253  -0.522  -0.426  -0.485  -0.473  -0.385  -0.421
41    R         1.653   1.672   1.749   1.829   1.853   1.977   1.826   1.852   1.973
42    R         1.653   1.672   1.749   1.829   1.853   1.977   1.826   1.852   1.973
43    E        -1.769  -1.749  -1.662  -1.643  -1.634  -1.471  -1.309  -1.283  -1.164
44    L        -0.279  -0.286  -0.284  -0.442  -0.436  -0.413  -0.473  -0.488  -0.464
45    P        -0.279  -0.346  -0.287  -0.205  -0.320  -0.243  -0.473  -0.549  -0.467
46    F        -0.892  -0.882  -0.843  -0.706  -0.671  -0.638  -0.882  -0.868  -0.801
47    P        -0.892  -0.849  -0.832  -0.812  -0.739  -0.737  -0.882  -0.828  -0.788
48    -        -0.995  -0.981  -0.890  -1.186  -1.146  -1.018  -0.995  -0.972  -0.851
49    A        -1.769  -1.749  -1.662  -1.804  -1.729  -1.632  -1.309  -1.283  -1.164
50    T        -0.887  -0.854  -0.841  -0.856  -0.826  -0.747  -0.891  -0.847  -0.801
51    D        -0.279  -0.280  -0.274  -0.356  -0.385  -0.364  -0.473  -0.481  -0.451
52    K        -0.162  -0.193  -0.223  -0.224  -0.260  -0.330  -0.281  -0.327  -0.368
53    V         0.367   0.359   0.435   0.016  -0.018   0.095   0.020  -0.004   0.102
54    V        -0.892  -0.912  -0.862  -0.977  -1.021  -0.931  -0.882  -0.899  -0.821
55    A        -1.769  -1.749  -1.662  -1.684  -1.619  -1.512  -1.309  -1.283  -1.164
56    I        -0.887  -0.926  -0.847  -1.002  -1.057  -0.944  -0.891  -0.920  -0.808
57    V         0.792   0.802   0.652   0.848   0.863   0.639   0.781   0.794   0.514
58    E        -0.720  -0.734  -0.780  -0.583  -0.591  -0.678  -0.682  -0.698  -0.729
59    R        -1.328  -1.332  -1.276  -1.407  -1.432  -1.315  -1.100  -1.096  -1.005
60    D         0.792   0.872   0.661   0.992   1.107   0.793   0.781   0.906   0.530
61    N        -0.279  -0.228  -0.254  -0.379  -0.309  -0.331  -0.473  -0.406  -0.425
62    S        -0.004   0.074  -0.137  -0.027   0.082  -0.230  -0.055   0.058  -0.246
63    K        -0.004  -0.079  -0.174   0.001  -0.110  -0.283  -0.055  -0.164  -0.299
64    W         1.653   1.672   1.749   1.993   2.015   2.139   1.826   1.852   1.973
65    S        -0.887  -0.835  -0.832  -0.999  -0.895  -0.918  -0.891  -0.831  -0.794
66    Q        -0.720  -0.743  -0.788  -0.591  -0.636  -0.703  -0.682  -0.708  -0.739
67    L        -0.004   0.013  -0.156  -0.091  -0.061  -0.325  -0.055  -0.028  -0.273
68    I         0.437   0.407   0.454   0.256   0.181   0.223   0.154   0.091   0.139
69    T        -1.328  -1.342  -1.288  -1.151  -1.203  -1.114  -1.100  -1.105  -1.016
70    N        -0.887  -0.839  -0.835  -0.986  -0.924  -0.891  -0.891  -0.834  -0.796
71    E        -1.328  -1.337  -1.288  -1.159  -1.192  -1.086  -1.100  -1.101  -1.015
72    M        -0.892  -0.904  -0.846  -0.989  -1.018  -0.905  -0.882  -0.891  -0.803
73    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
74    N        -0.892  -0.901  -0.859  -0.986  -1.015  -0.989  -0.882  -0.887  -0.818
75    P        -0.892  -0.850  -0.832  -0.792  -0.713  -0.713  -0.882  -0.827  -0.788
76    Q        -1.328  -1.285  -1.263  -1.120  -1.055  -1.009  -1.100  -1.049  -0.993
77    V        -0.279  -0.278  -0.274  -0.353  -0.361  -0.322  -0.473  -0.477  -0.451
78    L        -0.720  -0.786  -0.813  -0.712  -0.806  -0.806  -0.682  -0.756  -0.767
79    F        -0.279  -0.334  -0.273  -0.342  -0.410  -0.348  -0.473  -0.532  -0.449
80    T         0.329   0.349   0.434   0.026   0.044   0.188  -0.055  -0.021   0.101
81    A        -0.279  -0.248  -0.267  -0.612  -0.582  -0.603  -0.473  -0.444  -0.442
82    L         0.437   0.454   0.479   0.210   0.241   0.280   0.154   0.179   0.188
83    A         0.329   0.349   0.434  -0.113  -0.078   0.059  -0.055  -0.021   0.101
84    T         1.653   1.672   1.749   1.740   1.759   1.888   1.826   1.852   1.973
85    T         1.653   1.672   1.749   1.740   1.759   1.888   1.826   1.852   1.973
86    R         1.653   1.672   1.749   1.829   1.853   1.977   1.826   1.852   1.973
87    A         0.792   0.684   0.628   0.745   0.582   0.488   0.781   0.596   0.471
88    A        -0.004   0.013  -0.156  -0.028   0.000  -0.260  -0.055  -0.028  -0.273
89    A         1.653   1.672   1.749   1.572   1.595   1.721   1.826   1.852   1.973
90    G         1.653   1.672   1.749   1.559   1.586   1.709   1.826   1.852   1.973
91    G         0.792   0.802   0.652   0.715   0.730   0.488   0.781   0.794   0.514
92    L        -1.328  -1.342  -1.288  -1.289  -1.306  -1.266  -1.100  -1.105  -1.016
93    D        -0.279  -0.331  -0.271  -0.335  -0.415  -0.331  -0.473  -0.526  -0.444
94    K         0.437   0.483   0.493   0.412   0.505   0.476   0.154   0.235   0.215
95    Q         0.437   0.454   0.479   0.546   0.574   0.595   0.154   0.179   0.188
96    Y        -0.279  -0.346  -0.287  -0.150  -0.226  -0.151  -0.473  -0.549  -0.467
97    K         0.792   0.829   0.654   0.852   0.909   0.672   0.781   0.838   0.518
98    I         1.653   1.672   1.749   1.740   1.765   1.888   1.826   1.852   1.973
99    D         1.653   1.672   1.749   1.806   1.837   1.954   1.826   1.852   1.973
100   H         0.437   0.454   0.479   0.656   0.687   0.706   0.154   0.179   0.188
101   D         0.437   0.454   0.479   0.337   0.369   0.366   0.154   0.179   0.188
102   L        -0.279  -0.221  -0.258  -0.435  -0.362  -0.360  -0.473  -0.399  -0.427
103   N         1.653   1.672   1.749   1.853   1.882   2.000   1.826   1.852   1.973
104   L        -0.445  -0.432  -0.339  -0.645  -0.610  -0.474  -0.682  -0.660  -0.532
105   Q        -0.720  -0.761  -0.792  -0.571  -0.635  -0.683  -0.682  -0.728  -0.743
106   L        -0.004   0.013  -0.156  -0.041  -0.013  -0.249  -0.055  -0.028  -0.273
107   A         1.653   1.672   1.749   1.572   1.595   1.721   1.826   1.852   1.973
108   Q         0.792   0.858   0.656   0.852   0.947   0.675   0.781   0.885   0.522
109   A         0.792   0.872   0.661   0.745   0.854   0.544   0.781   0.906   0.530
110   A         0.792   0.829   0.654   0.727   0.779   0.504   0.781   0.838   0.518
111   K         1.653   1.672   1.749   1.632   1.664   1.781   1.826   1.852   1.973
112   E        -0.279  -0.327  -0.265  -0.376  -0.420  -0.330  -0.473  -0.521  -0.436
113   K        -0.445  -0.427  -0.339  -0.680  -0.648  -0.504  -0.682  -0.653  -0.532
114   G         1.653   1.672   1.749   1.559   1.586   1.709   1.826   1.852   1.973
115   C        -1.328  -1.337  -1.288  -1.009  -1.046  -0.977  -1.100  -1.101  -1.015
116   E         0.329   0.345   0.431   0.062   0.091   0.222  -0.055  -0.030   0.095
117   T        -0.279  -0.334  -0.273  -0.332  -0.400  -0.309  -0.473  -0.532  -0.449
118   I        -0.445  -0.428  -0.340  -0.351  -0.314  -0.179  -0.682  -0.654  -0.534
119   V         1.653   1.672   1.749   1.660   1.686   1.809   1.826   1.852   1.973
120   L         0.792   0.684   0.628   0.732   0.589   0.511   0.781   0.596   0.471
121   V         0.792   0.684   0.628   0.849   0.692   0.602   0.781   0.596   0.471
122   S         1.653   1.672   1.749   1.576   1.598   1.725   1.826   1.852   1.973
123   S         1.653   1.672   1.749   1.576   1.598   1.725   1.826   1.852   1.973
124   A        -0.887  -0.867  -0.833  -1.055  -1.019  -0.931  -0.891  -0.862  -0.794
125   G         1.653   1.672   1.749   1.559   1.586   1.709   1.826   1.852   1.973
126   A         0.792   0.684   0.628   0.761   0.602   0.518   0.781   0.596   0.471
127   H        -0.004  -0.054  -0.169   0.333   0.257   0.105  -0.055  -0.131  -0.292
128   P        -1.328  -1.339  -1.278  -1.326  -1.366  -1.258  -1.100  -1.102  -1.006
129   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
130   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
131   D        -0.279  -0.207  -0.257  -0.373  -0.271  -0.315  -0.473  -0.370  -0.424
132   S         0.792   0.684   0.628   0.765   0.604   0.521   0.781   0.596   0.471
133   R        -1.769  -1.749  -1.662  -1.255  -1.244  -1.086  -1.309  -1.283  -1.164
134   F        -0.887  -0.915  -0.840  -0.882  -0.916  -0.780  -0.891  -0.910  -0.801
135   G        -0.720  -0.671  -0.770  -0.529  -0.442  -0.648  -0.682  -0.617  -0.718
136   Y         1.653   1.672   1.749   1.929   1.961   2.075   1.826   1.852   1.973
137   M        -0.279  -0.337  -0.274  -0.411  -0.501  -0.382  -0.473  -0.536  -0.451
138   K        -0.004  -0.079  -0.174   0.102   0.005  -0.125  -0.055  -0.164  -0.299
139   M        -0.720  -0.662  -0.768  -0.475  -0.368  -0.606  -0.682  -0.606  -0.715
140   K         1.653   1.672   1.749   1.632   1.664   1.781   1.826   1.852   1.973
141   G         0.792   0.684   0.628   0.767   0.618   0.540   0.781   0.596   0.471
142   E        -0.004  -0.087  -0.180   0.069  -0.069  -0.251  -0.055  -0.174  -0.307
143   I        -0.887  -0.896  -0.851  -1.052  -1.074  -0.982  -0.891  -0.893  -0.812
144   E         1.653   1.672   1.749   1.732   1.759   1.880   1.826   1.852   1.973
145   R        -0.887  -0.854  -0.841  -0.731  -0.673  -0.646  -0.891  -0.847  -0.801
146   D         0.792   0.684   0.628   0.994   0.839   0.740   0.781   0.596   0.471
147   V         0.792   0.858   0.656   0.912   1.006   0.698   0.781   0.885   0.522
148   I         0.792   0.684   0.628   0.958   0.810   0.732   0.781   0.596   0.471
149   A        -0.004  -0.101  -0.184  -0.087  -0.249  -0.400  -0.055  -0.194  -0.313
150   L         1.653   1.672   1.749   1.518   1.546   1.668   1.826   1.852   1.973
151   D        -0.720  -0.692  -0.771  -0.542  -0.489  -0.638  -0.682  -0.642  -0.719
152   F         1.653   1.672   1.749   1.856   1.889   2.003   1.826   1.852   1.973
153   K        -0.887  -0.919  -0.846  -0.850  -0.883  -0.758  -0.891  -0.914  -0.807
154   H        -0.004   0.074  -0.137   0.371   0.494   0.147  -0.055   0.058  -0.246
155   I        -0.004  -0.054  -0.169   0.103   0.003  -0.182  -0.055  -0.131  -0.292
156   I         0.792   0.802   0.652   0.912   0.927   0.691   0.781   0.794   0.514
157   I         1.653   1.672   1.749   1.740   1.765   1.888   1.826   1.852   1.973
158   L         0.792   0.819   0.653   0.708   0.749   0.507   0.781   0.823   0.515
159   R         1.653   1.672   1.749   1.829   1.853   1.977   1.826   1.852   1.973
160   P         1.653   1.672   1.749   1.887   1.911   2.034   1.826   1.852   1.973
161   G         0.792   0.829   0.654   0.715   0.769   0.492   0.781   0.838   0.518
162   P        -0.720  -0.715  -0.776  -0.818  -0.832  -0.918  -0.682  -0.675  -0.725
163   L         0.792   0.684   0.628   0.708   0.555   0.467   0.781   0.596   0.471
164   L         1.653   1.672   1.749   1.518   1.546   1.668   1.826   1.852   1.973
165   G         1.653   1.672   1.749   1.559   1.586   1.709   1.826   1.852   1.973
166   E        -0.004   0.037  -0.145   0.129   0.196  -0.096  -0.055   0.006  -0.257
167   R         1.653   1.672   1.749   1.829   1.853   1.977   1.826   1.852   1.973
168   T        -1.769  -1.749  -1.662  -1.472  -1.447  -1.302  -1.309  -1.283  -1.164
169   N        -1.328  -1.259  -1.265  -1.285  -1.164  -1.177  -1.100  -1.023  -0.995
170   S        -0.720  -0.734  -0.780  -0.709  -0.755  -0.782  -0.682  -0.698  -0.729
171   K        -0.995  -0.966  -0.890  -0.813  -0.752  -0.648  -0.995  -0.957  -0.851
172   Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
173   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
174   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
175   S        -0.887  -0.851  -0.839  -0.811  -0.729  -0.710  -0.891  -0.846  -0.800
176   G         1.653   1.672   1.749   1.559   1.586   1.709   1.826   1.852   1.973
177   F        -0.279  -0.286  -0.284  -0.342  -0.382  -0.382  -0.473  -0.488  -0.464
178   G        -0.004  -0.087  -0.180  -0.129  -0.271  -0.453  -0.055  -0.174  -0.307
179   G        -0.720  -0.715  -0.776  -0.455  -0.427  -0.551  -0.682  -0.675  -0.725
180   N        -1.769  -1.749  -1.662  -1.721  -1.702  -1.548  -1.309  -1.283  -1.164
181   L        -0.279  -0.221  -0.258  -0.450  -0.373  -0.379  -0.473  -0.399  -0.427
182   T        -0.720  -0.761  -0.792  -0.548  -0.625  -0.705  -0.682  -0.728  -0.743
183   A        -1.328  -1.309  -1.283  -1.202  -1.153  -1.161  -1.100  -1.075  -1.011
184   A        -0.720  -0.761  -0.792  -0.792  -0.867  -0.937  -0.682  -0.728  -0.743
185   L        -0.279  -0.278  -0.269  -0.369  -0.387  -0.340  -0.473  -0.475  -0.445
186   G         0.792   0.872   0.661   0.715   0.829   0.503   0.781   0.906   0.530
187   T        -0.720  -0.715  -0.776  -0.500  -0.485  -0.610  -0.682  -0.675  -0.725
188   R        -0.887  -0.842  -0.840  -0.430  -0.363  -0.345  -0.891  -0.837  -0.800
189   V        -0.279  -0.248  -0.247  -0.320  -0.267  -0.258  -0.473  -0.421  -0.411
190   Y        -0.279  -0.346  -0.287  -0.263  -0.375  -0.316  -0.473  -0.549  -0.467
191   R        -0.279  -0.346  -0.287  -0.405  -0.528  -0.461  -0.473  -0.549  -0.467
192   S        -0.279  -0.346  -0.287  -0.511  -0.624  -0.525  -0.473  -0.549  -0.467
193   R        -1.328  -1.337  -1.288  -1.045  -1.065  -0.978  -1.100  -1.101  -1.015
194   F        -0.279  -0.333  -0.270  -0.393  -0.446  -0.335  -0.473  -0.530  -0.445
195   Q        -0.004  -0.087  -0.180   0.282   0.158  -0.015  -0.055  -0.174  -0.307
196   R        -0.887  -0.871  -0.838  -0.940  -0.899  -0.841  -0.891  -0.865  -0.799
197   L        -1.328  -1.326  -1.274  -1.396  -1.362  -1.291  -1.100  -1.091  -1.003
198   L        -0.279  -0.278  -0.274  -0.533  -0.545  -0.487  -0.473  -0.477  -0.451
199   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
200   Y         0.697   0.663   0.577   0.932   0.879   0.701   0.622   0.560   0.376
201   P         1.653   1.672   1.749   1.899   1.926   2.045   1.826   1.852   1.973
202   V        -0.279  -0.331  -0.271  -0.321  -0.375  -0.285  -0.473  -0.526  -0.444
203   Y        -1.328  -1.354  -1.290  -0.975  -1.022  -0.925  -1.100  -1.115  -1.018
204   G         0.437   0.399   0.451   0.111   0.027   0.094   0.154   0.075   0.134
205   D        -0.279  -0.238  -0.249  -0.334  -0.258  -0.290  -0.473  -0.405  -0.412
206   E        -0.004  -0.101  -0.184   0.135  -0.015  -0.152  -0.055  -0.194  -0.313
207   V         0.792   0.684   0.628   0.849   0.692   0.602   0.781   0.596   0.471
208   G         0.437   0.404   0.452   0.111   0.038   0.097   0.154   0.085   0.136
209   K        -0.004  -0.079  -0.174   0.064  -0.037  -0.184  -0.055  -0.164  -0.299
210   V         0.437   0.407   0.454   0.206   0.135   0.187   0.154   0.091   0.139
211   G         0.329   0.349   0.434  -0.113  -0.077   0.060  -0.055  -0.021   0.101
212   V         0.792   0.802   0.652   0.849   0.864   0.642   0.781   0.794   0.514
213   H        -0.887  -0.868  -0.831  -0.707  -0.685  -0.608  -0.891  -0.863  -0.792
214   L        -0.279  -0.294  -0.274  -0.571  -0.598  -0.538  -0.473  -0.495  -0.451
215   A         1.653   1.672   1.749   1.572   1.595   1.721   1.826   1.852   1.973
216   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
217   -        -0.333  -0.322  -0.283  -0.389  -0.370  -0.341  -0.525  -0.509  -0.454
218   -        -0.333  -0.336  -0.292  -0.342  -0.330  -0.277  -0.525  -0.528  -0.467
219   -        -0.333  -0.272  -0.280  -0.538  -0.441  -0.452  -0.525  -0.436  -0.450
220   L        -0.279  -0.294  -0.274  -0.512  -0.527  -0.478  -0.473  -0.495  -0.451
221   N        -1.328  -1.326  -1.274  -1.129  -1.125  -1.053  -1.100  -1.091  -1.003
222   T        -1.328  -1.250  -1.266  -1.298  -1.180  -1.182  -1.100  -1.014  -0.996
223   S        -1.328  -1.354  -1.290  -1.455  -1.498  -1.391  -1.100  -1.115  -1.018
224   G        -1.769  -1.749  -1.662  -1.794  -1.775  -1.621  -1.309  -1.283  -1.164
225   K        -1.328  -1.326  -1.274  -1.363  -1.334  -1.274  -1.100  -1.091  -1.003
226   D        -0.887  -0.897  -0.838  -0.788  -0.817  -0.719  -0.891  -0.894  -0.800
227   K        -0.004   0.037  -0.145   0.021   0.089  -0.201  -0.055   0.006  -0.257
228   V         0.792   0.684   0.628   0.901   0.760   0.696   0.781   0.596   0.471
229   Q        -1.328  -1.354  -1.290  -0.992  -1.014  -0.936  -1.100  -1.115  -1.018
230   F        -1.328  -1.332  -1.276  -1.172  -1.187  -1.085  -1.100  -1.096  -1.005
231   V         0.792   0.684   0.628   0.805   0.635   0.522   0.781   0.596   0.471
232   S        -0.279  -0.319  -0.262  -0.571  -0.611  -0.527  -0.473  -0.508  -0.431
233   S        -0.720  -0.786  -0.813  -0.742  -0.834  -0.875  -0.682  -0.756  -0.767
234   K        -0.887  -0.821  -0.834  -0.921  -0.812  -0.818  -0.891  -0.818  -0.795
235   D         0.437   0.470   0.474   0.380   0.440   0.426   0.154   0.211   0.180
236   I         0.329   0.344   0.430  -0.015   0.018   0.152  -0.055  -0.031   0.092
237   L        -0.279  -0.286  -0.284  -0.534  -0.546  -0.511  -0.473  -0.488  -0.464
238   D        -0.720  -0.652  -0.759  -0.586  -0.477  -0.618  -0.682  -0.594  -0.705
239   I         0.792   0.858   0.656   0.708   0.801   0.513   0.781   0.885   0.522
240   S        -0.887  -0.903  -0.840  -1.171  -1.203  -1.101  -0.891  -0.899  -0.801
241   A        -1.769  -1.749  -1.662  -1.589  -1.528  -1.418  -1.309  -1.283  -1.164
242   S        -0.279  -0.270  -0.266  -0.430  -0.420  -0.382  -0.473  -0.464  -0.442
243   L         0.579   0.590   0.544   0.454   0.473   0.399   0.415   0.432   0.313
244   E        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
245   K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
246   I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
247   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
248   T        -1.328  -1.259  -1.265  -1.266  -1.139  -1.170  -1.100  -1.023  -0.995
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/P40008
Output conservation file - output/P40008
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
