1     M         1.067   1.067   1.067   1.387   1.387   1.387   1.067   1.067   1.067
2     D        -0.933  -0.933  -0.933  -1.113  -1.113  -1.113  -0.933  -0.933  -0.933
3     K        -0.933  -0.933  -0.933  -0.894  -0.894  -0.894  -0.933  -0.933  -0.933
4     H        -0.933  -0.933  -0.933  -0.643  -0.643  -0.643  -0.933  -0.933  -0.933
5     T         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
6     A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
7     A        -0.933  -0.933  -0.933  -1.008  -1.008  -1.008  -0.933  -0.933  -0.933
8     I        -0.933  -0.933  -0.933  -0.871  -0.871  -0.871  -0.933  -0.933  -0.933
9     P        -0.933  -0.933  -0.933  -0.750  -0.750  -0.750  -0.933  -0.933  -0.933
10    T        -0.933  -0.933  -0.933  -0.950  -0.950  -0.950  -0.933  -0.933  -0.933
11    L        -0.933  -0.933  -0.933  -1.042  -1.042  -1.042  -0.933  -0.933  -0.933
12    T         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
13    I         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
14    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
15    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
16    K         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
17    V        -0.933  -0.933  -0.933  -1.042  -1.042  -1.042  -0.933  -0.933  -0.933
18    V         1.067   1.067   1.067   1.026   1.026   1.026   1.067   1.067   1.067
19    L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
20    L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
21    G         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
22    E        -0.933  -0.933  -0.933  -0.950  -0.950  -0.950  -0.933  -0.933  -0.933
23    S         1.067   1.067   1.067   1.103   1.103   1.103   1.067   1.067   1.067
24    A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
25    V         1.067   1.067   1.067   1.026   1.026   1.026   1.067   1.067   1.067
26    G         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
27    K         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
28    S         1.067   1.067   1.067   1.103   1.103   1.103   1.067   1.067   1.067
29    S         1.067   1.067   1.067   1.103   1.103   1.103   1.067   1.067   1.067
30    I        -0.933  -0.933  -0.933  -0.962  -0.962  -0.962  -0.933  -0.933  -0.933
31    V         1.067   1.067   1.067   1.026   1.026   1.026   1.067   1.067   1.067
32    L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
33    R         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
34    F         1.067   1.067   1.067   1.254   1.254   1.254   1.067   1.067   1.067
35    V         1.067   1.067   1.067   1.026   1.026   1.026   1.067   1.067   1.067
36    S        -0.933  -0.933  -0.933  -0.894  -0.894  -0.894  -0.933  -0.933  -0.933
37    D         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
38    D        -0.933  -0.933  -0.933  -0.761  -0.761  -0.761  -0.933  -0.933  -0.933
39    F         1.067   1.067   1.067   1.254   1.254   1.254   1.067   1.067   1.067
40    K        -0.933  -0.933  -0.933  -0.871  -0.871  -0.871  -0.933  -0.933  -0.933
41    E        -0.933  -0.933  -0.933  -0.950  -0.950  -0.950  -0.933  -0.933  -0.933
42    S        -0.933  -0.933  -0.933  -0.696  -0.696  -0.696  -0.933  -0.933  -0.933
43    K        -0.933  -0.933  -0.933  -0.849  -0.849  -0.849  -0.933  -0.933  -0.933
44    E         1.067   1.067   1.067   0.933   0.933   0.933   1.067   1.067   1.067
45    P        -0.933  -0.933  -0.933  -0.728  -0.728  -0.728  -0.933  -0.933  -0.933
46    T         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
47    I         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
48    G         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
49    A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
50    A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
51    F         1.067   1.067   1.067   1.254   1.254   1.254   1.067   1.067   1.067
52    L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
53    T         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
54    K        -0.933  -0.933  -0.933  -0.827  -0.827  -0.827  -0.933  -0.933  -0.933
55    R        -0.933  -0.933  -0.933  -0.849  -0.849  -0.849  -0.933  -0.933  -0.933
56    I        -0.933  -0.933  -0.933  -0.962  -0.962  -0.962  -0.933  -0.933  -0.933
57    T        -0.933  -0.933  -0.933  -0.772  -0.772  -0.772  -0.933  -0.933  -0.933
58    R        -0.933  -0.933  -0.933  -0.783  -0.783  -0.783  -0.933  -0.933  -0.933
59    D         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
60    G        -0.933  -0.933  -0.933  -0.928  -0.928  -0.928  -0.933  -0.933  -0.933
61    K        -0.933  -0.933  -0.933  -0.916  -0.916  -0.916  -0.933  -0.933  -0.933
62    V        -0.933  -0.933  -0.933  -0.950  -0.950  -0.950  -0.933  -0.933  -0.933
63    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
64    I        -0.933  -0.933  -0.933  -0.883  -0.883  -0.883  -0.933  -0.933  -0.933
65    K         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
66    F        -0.933  -0.933  -0.933  -0.871  -0.871  -0.871  -0.933  -0.933  -0.933
67    E         1.067   1.067   1.067   0.933   0.933   0.933   1.067   1.067   1.067
68    I         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
69    W         1.067   1.067   1.067   1.416   1.416   1.416   1.067   1.067   1.067
70    D         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
71    T         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
72    A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
73    G         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
74    Q         1.067   1.067   1.067   1.194   1.194   1.194   1.067   1.067   1.067
75    E         1.067   1.067   1.067   0.933   0.933   0.933   1.067   1.067   1.067
76    R         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
77    F        -0.933  -0.933  -0.933  -0.590  -0.590  -0.590  -0.933  -0.933  -0.933
78    A        -0.933  -0.933  -0.933  -1.184  -1.184  -1.184  -0.933  -0.933  -0.933
79    P        -0.933  -0.933  -0.933  -0.728  -0.728  -0.728  -0.933  -0.933  -0.933
80    L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
81    A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
82    P         1.067   1.067   1.067   1.269   1.269   1.269   1.067   1.067   1.067
83    M         1.067   1.067   1.067   1.387   1.387   1.387   1.067   1.067   1.067
84    Y         1.067   1.067   1.067   1.314   1.314   1.314   1.067   1.067   1.067
85    Y         1.067   1.067   1.067   1.314   1.314   1.314   1.067   1.067   1.067
86    R         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
87    N         1.067   1.067   1.067   1.072   1.072   1.072   1.067   1.067   1.067
88    A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
89    Q        -0.933  -0.933  -0.933  -0.805  -0.805  -0.805  -0.933  -0.933  -0.933
90    A        -0.933  -0.933  -0.933  -0.928  -0.928  -0.928  -0.933  -0.933  -0.933
91    A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
92    L        -0.933  -0.933  -0.933  -0.962  -0.962  -0.962  -0.933  -0.933  -0.933
93    V         1.067   1.067   1.067   1.026   1.026   1.026   1.067   1.067   1.067
94    V         1.067   1.067   1.067   1.026   1.026   1.026   1.067   1.067   1.067
95    F        -0.933  -0.933  -0.933  -0.590  -0.590  -0.590  -0.933  -0.933  -0.933
96    D         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
97    V        -0.933  -0.933  -0.933  -0.883  -0.883  -0.883  -0.933  -0.933  -0.933
98    T         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
99    N        -0.933  -0.933  -0.933  -0.805  -0.805  -0.805  -0.933  -0.933  -0.933
100   E        -0.933  -0.933  -0.933  -1.270  -1.270  -1.270  -0.933  -0.933  -0.933
101   G        -0.933  -0.933  -0.933  -1.089  -1.089  -1.089  -0.933  -0.933  -0.933
102   S         1.067   1.067   1.067   1.103   1.103   1.103   1.067   1.067   1.067
103   F        -0.933  -0.933  -0.933  -0.871  -0.871  -0.871  -0.933  -0.933  -0.933
104   Y        -0.933  -0.933  -0.933  -0.816  -0.816  -0.816  -0.933  -0.933  -0.933
105   K         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
106   A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
107   Q        -0.933  -0.933  -0.933  -0.827  -0.827  -0.827  -0.933  -0.933  -0.933
108   N        -0.933  -0.933  -0.933  -0.871  -0.871  -0.871  -0.933  -0.933  -0.933
109   W         1.067   1.067   1.067   1.416   1.416   1.416   1.067   1.067   1.067
110   V        -0.933  -0.933  -0.933  -0.883  -0.883  -0.883  -0.933  -0.933  -0.933
111   E        -0.933  -0.933  -0.933  -1.019  -1.019  -1.019  -0.933  -0.933  -0.933
112   E         1.067   1.067   1.067   0.933   0.933   0.933   1.067   1.067   1.067
113   L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
114   H        -0.933  -0.933  -0.933  -0.559  -0.559  -0.559  -0.933  -0.933  -0.933
115   E        -0.933  -0.933  -0.933  -0.928  -0.928  -0.928  -0.933  -0.933  -0.933
116   K        -0.933  -0.933  -0.933  -0.827  -0.827  -0.827  -0.933  -0.933  -0.933
117   V        -0.933  -0.933  -0.933  -1.196  -1.196  -1.196  -0.933  -0.933  -0.933
118   G        -0.933  -0.933  -0.933  -0.685  -0.685  -0.685  -0.933  -0.933  -0.933
119   H        -0.933  -0.933  -0.933  -0.739  -0.739  -0.739  -0.933  -0.933  -0.933
120   D        -0.933  -0.933  -0.933  -0.783  -0.783  -0.783  -0.933  -0.933  -0.933
121   I         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
122   V         1.067   1.067   1.067   1.026   1.026   1.026   1.067   1.067   1.067
123   I         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
124   A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
125   L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
126   V        -0.933  -0.933  -0.933  -1.196  -1.196  -1.196  -0.933  -0.933  -0.933
127   G         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
128   N         1.067   1.067   1.067   1.072   1.072   1.072   1.067   1.067   1.067
129   K         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
130   M        -0.933  -0.933  -0.933  -0.772  -0.772  -0.772  -0.933  -0.933  -0.933
131   D         1.067   1.067   1.067   1.134   1.134   1.134   1.067   1.067   1.067
132   L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
133   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
134   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
135   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
136   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
137   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
138   E        -0.933  -0.933  -0.933  -1.270  -1.270  -1.270  -0.933  -0.933  -0.933
139   N        -0.933  -0.933  -0.933  -0.805  -0.805  -0.805  -0.933  -0.933  -0.933
140   E         1.067   1.067   1.067   0.933   0.933   0.933   1.067   1.067   1.067
141   N        -0.933  -0.933  -0.933  -0.827  -0.827  -0.827  -0.933  -0.933  -0.933
142   R         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
143   A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
144   M        -0.933  -0.933  -0.933  -0.696  -0.696  -0.696  -0.933  -0.933  -0.933
145   K        -0.933  -0.933  -0.933  -1.019  -1.019  -1.019  -0.933  -0.933  -0.933
146   A        -0.933  -0.933  -0.933  -1.184  -1.184  -1.184  -0.933  -0.933  -0.933
147   P        -0.933  -0.933  -0.933  -1.008  -1.008  -1.008  -0.933  -0.933  -0.933
148   A        -0.933  -0.933  -0.933  -1.113  -1.113  -1.113  -0.933  -0.933  -0.933
149   V        -0.933  -0.933  -0.933  -1.196  -1.196  -1.196  -0.933  -0.933  -0.933
150   Q        -0.933  -0.933  -0.933  -0.905  -0.905  -0.905  -0.933  -0.933  -0.933
151   N        -0.933  -0.933  -0.933  -1.160  -1.160  -1.160  -0.933  -0.933  -0.933
152   L        -0.933  -0.933  -0.933  -0.827  -0.827  -0.827  -0.933  -0.933  -0.933
153   C        -0.933  -0.933  -0.933  -0.928  -0.928  -0.928  -0.933  -0.933  -0.933
154   E        -0.933  -0.933  -0.933  -1.270  -1.270  -1.270  -0.933  -0.933  -0.933
155   R        -0.933  -0.933  -0.933  -0.928  -0.928  -0.928  -0.933  -0.933  -0.933
156   E        -0.933  -0.933  -0.933  -1.270  -1.270  -1.270  -0.933  -0.933  -0.933
157   N         1.067   1.067   1.067   1.072   1.072   1.072   1.067   1.067   1.067
158   L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
159   L         1.067   1.067   1.067   0.917   0.917   0.917   1.067   1.067   1.067
160   Y        -0.933  -0.933  -0.933  -0.590  -0.590  -0.590  -0.933  -0.933  -0.933
161   F         1.067   1.067   1.067   1.254   1.254   1.254   1.067   1.067   1.067
162   E         1.067   1.067   1.067   0.933   0.933   0.933   1.067   1.067   1.067
163   A        -0.933  -0.933  -0.933  -1.184  -1.184  -1.184  -0.933  -0.933  -0.933
164   S         1.067   1.067   1.067   1.103   1.103   1.103   1.067   1.067   1.067
165   A         1.067   1.067   1.067   0.708   0.708   0.708   1.067   1.067   1.067
166   K         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
167   T         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
168   G        -0.933  -0.933  -0.933  -1.089  -1.089  -1.089  -0.933  -0.933  -0.933
169   E         1.067   1.067   1.067   0.933   0.933   0.933   1.067   1.067   1.067
170   N         1.067   1.067   1.067   1.072   1.072   1.072   1.067   1.067   1.067
171   I        -0.933  -0.933  -0.933  -0.883  -0.883  -0.883  -0.933  -0.933  -0.933
172   Y        -0.933  -0.933  -0.933  -0.718  -0.718  -0.718  -0.933  -0.933  -0.933
173   Q        -0.933  -0.933  -0.933  -0.905  -0.905  -0.905  -0.933  -0.933  -0.933
174   I        -0.933  -0.933  -0.933  -0.962  -0.962  -0.962  -0.933  -0.933  -0.933
175   F         1.067   1.067   1.067   1.254   1.254   1.254   1.067   1.067   1.067
176   Q        -0.933  -0.933  -0.933  -0.827  -0.827  -0.827  -0.933  -0.933  -0.933
177   T        -0.933  -0.933  -0.933  -1.184  -1.184  -1.184  -0.933  -0.933  -0.933
178   L        -0.933  -0.933  -0.933  -0.962  -0.962  -0.962  -0.933  -0.933  -0.933
179   G        -0.933  -0.933  -0.933  -1.089  -1.089  -1.089  -0.933  -0.933  -0.933
180   E        -0.933  -0.933  -0.933  -1.019  -1.019  -1.019  -0.933  -0.933  -0.933
181   K         1.067   1.067   1.067   1.042   1.042   1.042   1.067   1.067   1.067
182   V        -0.933  -0.933  -0.933  -1.042  -1.042  -1.042  -0.933  -0.933  -0.933
183   P         1.067   1.067   1.067   1.269   1.269   1.269   1.067   1.067   1.067
184   C        -0.933  -0.933  -0.933  -0.783  -0.783  -0.783  -0.933  -0.933  -0.933
185   P        -0.933  -0.933  -0.933  -0.849  -0.849  -0.849  -0.933  -0.933  -0.933
186   E        -0.933  -0.933  -0.933  -0.950  -0.950  -0.950  -0.933  -0.933  -0.933
187   Q        -0.933  -0.933  -0.933  -0.827  -0.827  -0.827  -0.933  -0.933  -0.933
188   N        -0.933  -0.933  -0.933  -1.008  -1.008  -1.008  -0.933  -0.933  -0.933
189   T        -0.933  -0.933  -0.933  -0.916  -0.916  -0.916  -0.933  -0.933  -0.933
190   R        -0.933  -0.933  -0.933  -0.739  -0.739  -0.739  -0.933  -0.933  -0.933
191   Q        -0.933  -0.933  -0.933  -1.066  -1.066  -1.066  -0.933  -0.933  -0.933
192   S        -0.933  -0.933  -0.933  -0.805  -0.805  -0.805  -0.933  -0.933  -0.933
193   S        -0.933  -0.933  -0.933  -0.805  -0.805  -0.805  -0.933  -0.933  -0.933
194   T        -0.933  -0.933  -0.933  -1.184  -1.184  -1.184  -0.933  -0.933  -0.933
195   H        -0.933  -0.933  -0.933  -0.675  -0.675  -0.675  -0.933  -0.933  -0.933
196   D        -0.933  -0.933  -0.933  -0.849  -0.849  -0.849  -0.933  -0.933  -0.933
197   R         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
198   T        -0.933  -0.933  -0.933  -0.849  -0.849  -0.849  -0.933  -0.933  -0.933
199   I        -0.933  -0.933  -0.933  -0.883  -0.883  -0.883  -0.933  -0.933  -0.933
200   T        -0.933  -0.933  -0.933  -0.916  -0.916  -0.916  -0.933  -0.933  -0.933
201   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
202   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
203   Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
204   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
205   I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
206   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
207   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
208   E        -0.933  -0.933  -0.933  -1.113  -1.113  -1.113  -0.933  -0.933  -0.933
209   S         1.067   1.067   1.067   1.103   1.103   1.103   1.067   1.067   1.067
210   T        -0.933  -0.933  -0.933  -1.019  -1.019  -1.019  -0.933  -0.933  -0.933
211   T        -0.933  -0.933  -0.933  -1.184  -1.184  -1.184  -0.933  -0.933  -0.933
212   V        -0.933  -0.933  -0.933  -0.860  -0.860  -0.860  -0.933  -0.933  -0.933
213   E        -0.933  -0.933  -0.933  -0.849  -0.849  -0.849  -0.933  -0.933  -0.933
214   S        -0.933  -0.933  -0.933  -1.136  -1.136  -1.136  -0.933  -0.933  -0.933
215   T        -0.933  -0.933  -0.933  -1.184  -1.184  -1.184  -0.933  -0.933  -0.933
216   R        -0.933  -0.933  -0.933  -0.739  -0.739  -0.739  -0.933  -0.933  -0.933
217   E        -0.933  -0.933  -0.933  -0.849  -0.849  -0.849  -0.933  -0.933  -0.933
218   T        -0.933  -0.933  -0.933  -0.894  -0.894  -0.894  -0.933  -0.933  -0.933
219   G         1.067   1.067   1.067   1.164   1.164   1.164   1.067   1.067   1.067
220   G        -0.933  -0.933  -0.933  -0.805  -0.805  -0.805  -0.933  -0.933  -0.933
221   C         1.067   1.067   1.067   1.372   1.372   1.372   1.067   1.067   1.067
222   N        -0.933  -0.933  -0.933  -0.871  -0.871  -0.871  -0.933  -0.933  -0.933
223   C         1.067   1.067   1.067   1.372   1.372   1.372   1.067   1.067   1.067
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/P36019
Output conservation file - output/P36019
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
