1     M         1.480   1.533   1.632   1.706   1.781   1.938   1.622   1.708   1.877
2     F         1.480   1.533   1.632   1.451   1.481   1.693   1.622   1.708   1.877
3     I         0.752   0.738   0.541   0.660   0.575   0.356   0.790   0.767   0.405
4     L         0.752   0.517   0.530   0.777   0.458   0.484   0.790   0.398   0.383
5     S         0.140   0.206   0.333  -0.060   0.065   0.243  -0.280  -0.181   0.005
6     K        -0.260  -0.207  -0.322  -0.302  -0.187  -0.415  -0.399  -0.333  -0.482
7     I        -1.073  -0.910  -0.909  -1.406  -1.281  -1.143  -1.113  -0.930  -0.876
8     A        -0.946  -0.828  -0.884  -0.936  -0.775  -0.818  -0.994  -0.858  -0.852
9     D         1.480   1.533   1.632   1.470   1.561   1.711   1.622   1.708   1.877
10    L         0.752   0.738   0.541   0.737   0.707   0.409   0.790   0.767   0.405
11    V         0.201   0.251   0.339  -0.177  -0.159   0.003  -0.162  -0.093   0.016
12    R         0.058  -0.203  -0.262   0.382   0.055  -0.086   0.076  -0.300  -0.386
13    I         0.752   0.824   0.556   0.660   0.689   0.381   0.790   0.901   0.431
14    P        -0.595  -0.797  -0.864  -0.327  -0.592  -0.707  -0.518  -0.772  -0.820
15    P         1.480   1.533   1.632   1.517   1.657   1.756   1.622   1.708   1.877
16    D        -1.407  -1.426  -1.343  -1.319  -1.361  -1.196  -1.232  -1.233  -1.087
17    Q        -1.742  -1.776  -1.704  -1.338  -1.408  -1.329  -1.350  -1.364  -1.229
18    F         1.480   1.533   1.632   1.451   1.481   1.693   1.622   1.708   1.877
19    H        -1.534  -1.542  -1.360  -1.314  -1.321  -1.057  -1.350  -1.320  -1.100
20    R        -0.946  -0.780  -0.881  -0.999  -0.759  -0.927  -0.994  -0.785  -0.844
21    D        -0.403  -0.472  -0.334  -0.579  -0.594  -0.466  -0.637  -0.679  -0.496
22    T        -1.407  -1.407  -1.334  -1.379  -1.431  -1.281  -1.232  -1.213  -1.078
23    I        -1.869  -1.840  -1.711  -1.801  -1.793  -1.562  -1.469  -1.414  -1.235
24    S        -1.407  -1.446  -1.346  -1.394  -1.444  -1.299  -1.232  -1.247  -1.089
25    A        -0.260  -0.053  -0.281  -0.192   0.085  -0.220  -0.399  -0.117  -0.418
26    I         0.752   0.738   0.541   0.660   0.575   0.356   0.790   0.767   0.405
27    T        -1.407  -1.468  -1.337  -1.346  -1.453  -1.273  -1.232  -1.260  -1.081
28    H        -0.946  -0.842  -0.877  -0.852  -0.729  -0.772  -0.994  -0.851  -0.840
29    Q         0.058  -0.009  -0.220   0.083   0.055  -0.261   0.076  -0.061  -0.325
30    L         0.201   0.199   0.333  -0.194  -0.314  -0.030  -0.162  -0.193   0.004
31    N         0.752   0.738   0.541   0.999   0.991   0.740   0.790   0.767   0.405
32    N        -1.407  -1.335  -1.319  -1.316  -1.231  -1.168  -1.232  -1.150  -1.065
33    K         0.752   0.824   0.556   0.832   0.964   0.602   0.790   0.901   0.431
34    F         0.393   0.587   0.440   0.481   0.795   0.504   0.195   0.520   0.214
35    A         0.752   0.885   0.558   0.912   1.072   0.641   0.790   0.991   0.436
36    N         1.480   1.533   1.632   1.607   1.686   1.843   1.622   1.708   1.877
37    K         1.480   1.533   1.632   1.444   1.553   1.686   1.622   1.708   1.877
38    I         0.140   0.222   0.343  -0.327  -0.232   0.013  -0.280  -0.149   0.023
39    I         0.058  -0.078  -0.231   0.026  -0.260  -0.401   0.076  -0.142  -0.341
40    P        -1.742  -1.776  -1.704  -1.441  -1.440  -1.384  -1.350  -1.364  -1.229
41    N        -0.260  -0.086  -0.275  -0.071   0.174  -0.094  -0.399  -0.138  -0.408
42    V        -0.611  -0.501  -0.397  -1.056  -0.965  -0.723  -0.875  -0.721  -0.581
43    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
44    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
45    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
46    G         0.752   0.517   0.530   0.860   0.545   0.552   0.790   0.398   0.383
47    L         0.752   0.517   0.530   0.801   0.497   0.543   0.790   0.398   0.383
48    C        -1.407  -1.447  -1.340  -1.196  -1.282  -1.121  -1.232  -1.246  -1.083
49    I         0.393   0.566   0.453   0.132   0.328   0.203   0.195   0.484   0.238
50    T        -0.529  -0.430  -0.394  -0.508  -0.330  -0.314  -0.756  -0.618  -0.575
51    I        -0.864  -0.880  -0.865  -0.947  -0.961  -0.931  -0.875  -0.879  -0.827
52    Y        -0.260  -0.386  -0.320  -0.060  -0.248  -0.184  -0.399  -0.552  -0.475
53    D         0.752   0.517   0.530   0.801   0.434   0.447   0.790   0.398   0.383
54    L        -1.199  -1.270  -1.294  -1.147  -1.344  -1.341  -0.994  -1.074  -1.037
55    L        -0.260  -0.389  -0.333  -0.438  -0.680  -0.598  -0.399  -0.556  -0.496
56    T        -1.407  -1.435  -1.327  -1.416  -1.463  -1.326  -1.232  -1.233  -1.073
57    V        -0.403  -0.521  -0.360  -0.701  -0.925  -0.604  -0.637  -0.754  -0.539
58    E        -1.534  -1.464  -1.356  -1.607  -1.412  -1.326  -1.350  -1.268  -1.097
59    E        -0.260  -0.386  -0.320  -0.428  -0.493  -0.487  -0.399  -0.552  -0.475
60    G         0.752   0.517   0.530   0.877   0.593   0.595   0.790   0.398   0.383
61    Q        -0.864  -0.998  -0.899  -0.732  -0.894  -0.827  -0.875  -1.002  -0.863
62    L        -0.595  -0.797  -0.864  -0.514  -0.845  -0.952  -0.518  -0.772  -0.820
63    K         0.058   0.204  -0.202   0.224   0.439  -0.097   0.076   0.280  -0.298
64    P        -0.260  -0.370  -0.357  -0.210  -0.347  -0.355  -0.399  -0.569  -0.531
65    G         0.752   0.517   0.530   0.860   0.545   0.552   0.790   0.398   0.383
66    D         0.752   0.517   0.530   0.819   0.476   0.493   0.790   0.398   0.383
67    G         0.752   0.517   0.530   0.854   0.546   0.540   0.790   0.398   0.383
68    S        -0.403  -0.345  -0.339  -0.483  -0.418  -0.372  -0.637  -0.566  -0.514
69    S         0.201   0.214   0.337   0.030   0.029   0.222  -0.162  -0.165   0.012
70    Y         0.140   0.206   0.335  -0.049   0.007   0.248  -0.280  -0.180   0.008
71    I        -0.461  -0.483  -0.375  -0.753  -0.728  -0.539  -0.707  -0.706  -0.553
72    N        -0.367  -0.362  -0.361  -0.428  -0.416  -0.477  -0.552  -0.535  -0.533
73    V         0.687   0.665   0.492   0.669   0.655   0.334   0.690   0.650   0.312
74    T        -0.595  -0.793  -0.850  -0.334  -0.653  -0.779  -0.518  -0.767  -0.803
75    F         1.480   1.533   1.632   1.451   1.481   1.693   1.622   1.708   1.877
76    R         0.752   0.517   0.530   0.963   0.646   0.597   0.790   0.398   0.383
77    A        -1.534  -1.431  -1.350  -1.295  -1.137  -1.030  -1.350  -1.222  -1.093
78    V        -0.260  -0.126  -0.306  -0.424  -0.291  -0.541  -0.399  -0.237  -0.460
79    V         0.752   0.738   0.541   0.756   0.727   0.427   0.790   0.767   0.405
80    F         0.393   0.505   0.429   0.345   0.469   0.394   0.195   0.378   0.192
81    K         0.201   0.199   0.333   0.008   0.031   0.221  -0.162  -0.193   0.004
82    P         1.480   1.533   1.632   1.517   1.657   1.756   1.622   1.708   1.877
83    F         1.480   1.533   1.632   1.451   1.481   1.693   1.622   1.708   1.877
84    L        -1.869  -1.749  -1.685  -1.819  -1.674  -1.564  -1.469  -1.355  -1.216
85    G         0.752   0.517   0.530   0.889   0.602   0.622   0.790   0.398   0.383
86    E         1.480   1.533   1.632   1.313   1.490   1.560   1.622   1.708   1.877
87    I         0.140   0.232   0.349  -0.327  -0.206   0.029  -0.280  -0.130   0.036
88    V        -0.864  -0.937  -0.863  -0.946  -1.114  -0.926  -0.875  -0.929  -0.821
89    T        -0.260  -0.325  -0.356  -0.249  -0.418  -0.497  -0.399  -0.529  -0.531
90    G         0.752   0.517   0.530   0.860   0.545   0.552   0.790   0.398   0.383
91    W         0.058  -0.203  -0.262   0.407   0.068  -0.086   0.076  -0.300  -0.386
92    I         0.393   0.505   0.429   0.132   0.232   0.160   0.195   0.378   0.192
93    S        -0.529  -0.544  -0.420  -0.652  -0.663  -0.509  -0.756  -0.780  -0.611
94    K        -1.869  -1.732  -1.693  -1.711  -1.419  -1.401  -1.469  -1.345  -1.222
95    C         0.752   0.517   0.530   1.091   0.814   0.786   0.790   0.398   0.383
96    T        -0.260  -0.137  -0.308  -0.180   0.006  -0.283  -0.399  -0.239  -0.461
97    A        -0.864  -0.762  -0.872  -0.849  -0.779  -0.892  -0.875  -0.798  -0.837
98    E         0.752   0.830   0.558   0.662   0.870   0.394   0.790   0.910   0.436
99    G         1.480   1.533   1.632   1.495   1.593   1.735   1.622   1.708   1.877
100   I         1.480   1.533   1.632   1.317   1.326   1.564   1.622   1.708   1.877
101   K        -0.595  -0.752  -0.835  -0.361  -0.543  -0.654  -0.518  -0.724  -0.786
102   V         0.752   0.517   0.530   0.769   0.420   0.437   0.790   0.398   0.383
103   S        -1.407  -1.474  -1.348  -1.305  -1.376  -1.197  -1.232  -1.266  -1.091
104   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
105   L        -0.403  -0.316  -0.313  -0.458  -0.292  -0.305  -0.637  -0.480  -0.470
106   G        -0.946  -1.045  -0.905  -1.137  -1.194  -1.043  -0.994  -1.060  -0.870
107   I        -0.260   0.036  -0.276  -0.382  -0.001  -0.437  -0.399   0.012  -0.410
108   F         1.480   1.533   1.632   1.451   1.481   1.693   1.622   1.708   1.877
109   D         0.058  -0.043  -0.222   0.180   0.043  -0.248   0.076  -0.101  -0.328
110   D         0.393   0.505   0.429   0.246   0.460   0.244   0.195   0.378   0.192
111   I         1.480   1.533   1.632   1.317   1.326   1.564   1.622   1.708   1.877
112   F         0.752   0.830   0.558   0.834   0.895   0.599   0.790   0.910   0.436
113   I         0.393   0.331   0.376   0.132  -0.071   0.059   0.195   0.061   0.089
114   P         1.480   1.533   1.632   1.517   1.657   1.756   1.622   1.708   1.877
115   Q        -0.529  -0.452  -0.379  -0.637  -0.527  -0.415  -0.756  -0.666  -0.557
116   N        -1.407  -1.424  -1.335  -1.209  -1.277  -1.099  -1.232  -1.231  -1.080
117   M        -1.199  -1.245  -1.304  -0.834  -0.985  -1.090  -0.994  -1.046  -1.048
118   L         0.752   0.880   0.566   0.757   0.917   0.497   0.790   0.984   0.450
119   F         0.752   0.517   0.530   0.811   0.447   0.499   0.790   0.398   0.383
120   E         0.393   0.269   0.359   0.144  -0.006   0.051   0.195  -0.057   0.056
121   G        -0.403  -0.315  -0.328  -0.448  -0.253  -0.298  -0.637  -0.478  -0.488
122   C         0.160   0.228   0.341   0.082   0.191   0.348  -0.242  -0.137   0.019
123   Y        -1.371  -1.430  -1.360  -1.126  -1.247  -1.199  -1.173  -1.217  -1.099
124   Y         0.160   0.247   0.350  -0.019   0.113   0.276  -0.242  -0.099   0.037
125   T        -1.371  -1.337  -1.332  -1.217  -1.187  -1.184  -1.173  -1.132  -1.074
126   P        -0.059  -0.098  -0.292   0.050   0.005  -0.348  -0.086  -0.139  -0.429
127   E        -1.898  -1.862  -1.716  -1.955  -1.883  -1.662  -1.484  -1.427  -1.238
128   E         0.687   0.795   0.512   0.579   0.737   0.320   0.690   0.855   0.351
129   S        -1.898  -1.749  -1.698  -1.607  -1.382  -1.340  -1.484  -1.338  -1.225
130   A         1.480   1.533   1.632   1.582   1.666   1.819   1.622   1.708   1.877
131   W         1.480   1.533   1.632   1.667   1.756   1.901   1.622   1.708   1.877
132   I        -0.461  -0.439  -0.366  -0.753  -0.686  -0.537  -0.707  -0.659  -0.543
133   W         0.687   0.711   0.501   0.967   1.016   0.701   0.690   0.725   0.330
134   P        -0.988  -1.006  -0.928  -1.026  -1.050  -0.930  -1.018  -1.020  -0.895
135   M        -0.988  -1.038  -0.931  -0.924  -1.051  -0.922  -1.018  -1.051  -0.897
136   D         0.687   0.576   0.486   0.707   0.543   0.356   0.690   0.501   0.302
137   E        -0.367  -0.379  -0.348  -0.631  -0.630  -0.595  -0.552  -0.545  -0.516
138   E         0.609   0.639   0.475   0.460   0.518   0.247   0.565   0.607   0.281
139   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
140   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
141   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
142   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
143   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
144   T        -0.595  -0.729  -0.841  -0.256  -0.454  -0.614  -0.518  -0.695  -0.793
145   K         0.201   0.377   0.401  -0.209   0.189   0.112  -0.162   0.146   0.137
146   L         1.480   1.533   1.632   1.407   1.484   1.650   1.622   1.708   1.877
147   Y         0.324   0.327   0.359   0.364   0.349   0.337   0.069   0.054   0.056
148   F        -0.605  -0.549  -0.418  -0.991  -0.917  -0.716  -0.863  -0.784  -0.609
149   D         1.480   1.533   1.632   1.464   1.551   1.706   1.622   1.708   1.877
150   V        -0.367  -0.410  -0.374  -0.566  -0.649  -0.593  -0.552  -0.611  -0.553
151   N         0.687   0.576   0.486   0.884   0.735   0.554   0.690   0.501   0.302
152   E         1.480   1.533   1.632   1.311   1.402   1.558   1.622   1.708   1.877
153   K        -0.059  -0.104  -0.286   0.005  -0.079  -0.347  -0.086  -0.159  -0.420
154   I         1.480   1.533   1.632   1.323   1.399   1.570   1.622   1.708   1.877
155   R         1.480   1.533   1.632   1.633   1.715   1.867   1.622   1.708   1.877
156   F         1.480   1.533   1.632   1.464   1.548   1.706   1.622   1.708   1.877
157   R         0.687   0.576   0.486   0.931   0.788   0.640   0.690   0.501   0.302
158   I         0.160   0.239   0.347  -0.291  -0.165   0.009  -0.242  -0.116   0.032
159   E         1.480   1.533   1.632   1.311   1.402   1.558   1.622   1.708   1.877
160   R        -0.988  -0.936  -0.909  -1.054  -0.993  -0.886  -1.018  -0.955  -0.875
161   E         1.480   1.533   1.632   1.311   1.402   1.558   1.622   1.708   1.877
162   V        -1.371  -1.430  -1.360  -1.375  -1.480  -1.395  -1.173  -1.217  -1.099
163   F         1.480   1.533   1.632   1.464   1.548   1.706   1.622   1.708   1.877
164   V        -0.059  -0.098  -0.292   0.054   0.028  -0.248  -0.086  -0.139  -0.429
165   D         0.324   0.386   0.390   0.227   0.325   0.312   0.069   0.164   0.118
166   V        -0.367  -0.410  -0.374  -0.611  -0.705  -0.673  -0.552  -0.611  -0.553
167   K        -0.059  -0.214  -0.316   0.005  -0.216  -0.399  -0.086  -0.306  -0.464
168   P         1.480   1.533   1.632   1.508   1.604   1.747   1.622   1.708   1.877
169   K        -0.059  -0.025  -0.278  -0.018   0.037  -0.380  -0.086  -0.039  -0.408
170   S        -0.750  -0.888  -0.901  -0.613  -0.834  -0.890  -0.707  -0.867  -0.862
171   P        -1.371  -1.430  -1.360  -1.218  -1.303  -1.223  -1.173  -1.217  -1.099
172   K        -0.750  -0.738  -0.877  -0.692  -0.679  -0.914  -0.707  -0.686  -0.834
173   E        -0.059  -0.214  -0.316  -0.065  -0.263  -0.390  -0.086  -0.306  -0.464
174   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
175   E        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
176   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
177   E        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
178   E        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
179   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
180   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
181   Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
182   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
183   E        -1.094  -0.853  -0.927  -1.098  -0.705  -0.866  -1.117  -0.823  -0.890
184   N        -1.630  -1.521  -1.385  -1.599  -1.441  -1.240  -1.422  -1.301  -1.120
185   E        -1.630  -1.521  -1.385  -1.678  -1.487  -1.315  -1.422  -1.301  -1.120
186   I        -1.094  -0.985  -0.929  -1.291  -1.139  -1.038  -1.117  -0.984  -0.893
187   E        -1.094  -1.096  -0.958  -1.223  -1.188  -0.969  -1.117  -1.108  -0.925
188   G        -1.515  -1.421  -1.342  -1.418  -1.281  -1.171  -1.329  -1.221  -1.086
189   K        -1.371  -1.206  -1.300  -1.225  -0.957  -1.175  -1.173  -0.990  -1.044
190   N        -1.371  -1.206  -1.300  -1.325  -1.113  -1.189  -1.173  -0.990  -1.044
191   E        -0.750  -0.741  -0.866  -0.770  -0.758  -0.923  -0.707  -0.698  -0.822
192   E         0.250   0.263   0.341  -0.059  -0.036   0.103  -0.069  -0.070   0.020
193   T        -1.536  -1.458  -1.356  -1.526  -1.425  -1.258  -1.337  -1.244  -1.096
194   P        -0.921  -0.836  -0.893  -0.815  -0.697  -0.781  -0.914  -0.804  -0.852
195   Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
196   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
197   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
198   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
199   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
200   N        -1.371  -1.260  -1.319  -1.278  -1.130  -1.190  -1.173  -1.047  -1.062
201   E        -0.750  -0.738  -0.877  -0.751  -0.729  -0.907  -0.707  -0.686  -0.834
202   K        -0.750  -0.888  -0.901  -0.661  -0.872  -0.899  -0.707  -0.867  -0.862
203   P        -0.988  -0.946  -0.927  -1.068  -1.027  -0.988  -1.018  -0.966  -0.893
204   P         0.687   0.576   0.486   0.784   0.642   0.475   0.690   0.501   0.302
205   A         0.160   0.284   0.370  -0.039   0.176   0.293  -0.242  -0.029   0.077
206   Y         1.480   1.533   1.632   1.671   1.760   1.904   1.622   1.708   1.877
207   A        -0.367  -0.426  -0.378  -0.319  -0.426  -0.355  -0.552  -0.637  -0.558
208   L         0.687   0.711   0.501   0.645   0.693   0.330   0.690   0.725   0.330
209   L        -0.367  -0.404  -0.378  -0.589  -0.691  -0.620  -0.552  -0.616  -0.559
210   G         0.160   0.284   0.370  -0.038   0.186   0.300  -0.242  -0.029   0.077
211   S         1.480   1.533   1.632   1.516   1.598   1.755   1.622   1.708   1.877
212   C         1.480   1.533   1.632   1.705   1.792   1.937   1.622   1.708   1.877
213   Q         0.687   0.576   0.486   0.931   0.786   0.607   0.690   0.501   0.302
214   T        -1.371  -1.430  -1.360  -1.147  -1.253  -1.175  -1.173  -1.217  -1.099
215   D        -0.059  -0.098  -0.292   0.025  -0.031  -0.349  -0.086  -0.139  -0.429
216   G         1.480   1.533   1.632   1.484   1.573   1.725   1.622   1.708   1.877
217   M        -0.059  -0.066  -0.276   0.266   0.234  -0.113  -0.086  -0.110  -0.406
218   G         1.480   1.533   1.632   1.484   1.573   1.725   1.622   1.708   1.877
219   L        -0.367  -0.427  -0.367  -0.471  -0.569  -0.481  -0.552  -0.618  -0.541
220   V         0.687   0.576   0.486   0.700   0.566   0.396   0.690   0.501   0.302
221   S         0.687   0.576   0.486   0.803   0.653   0.508   0.690   0.501   0.302
222   W         1.480   1.533   1.632   1.667   1.756   1.901   1.622   1.708   1.877
223   W         1.480   1.533   1.632   1.667   1.756   1.901   1.622   1.708   1.877
224   E        -0.461  -0.494  -0.375  -0.802  -0.836  -0.645  -0.707  -0.723  -0.555
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/P35718
Output conservation file - output/P35718
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
