1     M         1.892   1.950   2.033   2.091   2.179   2.316   2.091   2.176   2.326
2     N         0.908   0.960   0.784   0.819   0.912   0.634   0.922   0.999   0.687
3     T        -0.379  -0.312  -0.289  -0.590  -0.493  -0.474  -0.539  -0.443  -0.416
4     N        -0.379  -0.425  -0.341  -0.716  -0.779  -0.671  -0.539  -0.597  -0.488
5     S        -0.379  -0.425  -0.341  -0.642  -0.737  -0.622  -0.539  -0.597  -0.488
6     N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
7     T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
8     M        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
9     V        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
10    M        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
11    N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
12    D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
13    A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
14    N        -1.517  -1.496  -1.433  -1.330  -1.273  -1.218  -1.182  -1.145  -1.052
15    Q        -0.317  -0.414  -0.324  -0.450  -0.590  -0.449  -0.481  -0.585  -0.470
16    A        -0.822  -0.830  -0.887  -0.624  -0.684  -0.708  -0.715  -0.724  -0.763
17    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
18    Q        -0.183  -0.218  -0.244  -0.149  -0.234  -0.229  -0.266  -0.322  -0.354
19    I        -1.018  -1.052  -0.977  -1.164  -1.229  -1.134  -0.939  -0.964  -0.861
20    T        -1.018  -0.913  -0.926  -1.080  -0.918  -0.956  -0.939  -0.810  -0.806
21    A        -0.822  -0.679  -0.818  -0.470  -0.256  -0.469  -0.715  -0.531  -0.684
22    T        -1.012  -1.030  -0.970  -1.066  -1.126  -1.014  -0.949  -0.946  -0.856
23    F         0.908   0.960   0.784   1.028   1.102   0.884   0.922   0.999   0.687
24    T        -0.317  -0.159  -0.277  -0.512  -0.262  -0.434  -0.481  -0.261  -0.405
25    K         0.908   0.732   0.724   1.080   0.848   0.826   0.922   0.619   0.578
26    K        -0.003  -0.137  -0.197   0.201  -0.007  -0.099  -0.013  -0.205  -0.286
27    I        -0.508  -0.450  -0.362  -0.772  -0.672  -0.545  -0.715  -0.631  -0.518
28    L         0.908   0.732   0.724   0.891   0.649   0.622   0.922   0.619   0.578
29    A        -0.003  -0.147  -0.193   0.222   0.002  -0.091  -0.013  -0.218  -0.282
30    H        -0.317  -0.414  -0.324  -0.248  -0.399  -0.267  -0.481  -0.585  -0.470
31    L         1.892   1.950   2.033   1.790   1.891   2.013   2.091   2.176   2.326
32    D         1.892   1.950   2.033   1.874   1.964   2.098   2.091   2.176   2.326
33    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
34    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
35    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
36    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
37    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
38    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
39    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
40    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
41    D        -0.508  -0.460  -0.360  -0.621  -0.565  -0.400  -0.715  -0.645  -0.514
42    P        -0.317  -0.406  -0.290  -0.382  -0.485  -0.321  -0.481  -0.575  -0.429
43    D        -0.317  -0.414  -0.324  -0.377  -0.511  -0.366  -0.481  -0.585  -0.470
44    S        -0.003  -0.071  -0.188   0.064  -0.063  -0.251  -0.013  -0.122  -0.274
45    N         0.908   1.059   0.785   0.867   1.084   0.716   0.922   1.156   0.689
46    K         0.422   0.437   0.524   0.202   0.205   0.337   0.071   0.078   0.200
47    L         0.502   0.554   0.586   0.352   0.439   0.483   0.220   0.300   0.319
48    A        -1.517  -1.458  -1.465  -1.277  -1.236  -1.155  -1.182  -1.113  -1.080
49    Q        -0.317  -0.237  -0.279  -0.374  -0.252  -0.321  -0.481  -0.372  -0.408
50    F         0.502   0.554   0.586   0.407   0.480   0.529   0.220   0.300   0.319
51    V        -0.412  -0.343  -0.344  -0.612  -0.496  -0.511  -0.603  -0.509  -0.495
52    Q         1.892   1.950   2.033   1.818   1.910   2.042   2.091   2.176   2.326
53    L         0.799   0.789   0.683   0.707   0.691   0.522   0.744   0.718   0.502
54    F         0.422   0.437   0.524   0.230   0.239   0.375   0.071   0.078   0.200
55    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
56    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
57    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
58    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
59    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
60    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
61    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
62    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
63    N        -0.317  -0.175  -0.275  -0.600  -0.337  -0.534  -0.481  -0.274  -0.402
64    P        -0.317  -0.414  -0.324  -0.338  -0.463  -0.322  -0.481  -0.585  -0.470
65    N        -1.517  -1.353  -1.418  -1.307  -1.080  -1.153  -1.182  -1.002  -1.038
66    N        -1.517  -1.496  -1.433  -1.576  -1.534  -1.464  -1.182  -1.145  -1.052
67    C        -0.317  -0.404  -0.289  -0.215  -0.352  -0.201  -0.481  -0.571  -0.428
68    R        -0.317  -0.159  -0.277  -0.231   0.010  -0.149  -0.481  -0.261  -0.405
69    I         0.908   1.011   0.774   0.914   1.074   0.716   0.922   1.081   0.668
70    I         0.502   0.472   0.534   0.267   0.199   0.274   0.220   0.146   0.219
71    F        -1.517  -1.532  -1.468  -1.146  -1.133  -1.035  -1.182  -1.175  -1.083
72    N         1.892   1.950   2.033   1.741   1.843   1.964   2.091   2.176   2.326
73    A        -0.317  -0.159  -0.277  -0.421  -0.180  -0.335  -0.481  -0.261  -0.405
74    T        -1.012  -0.947  -0.925  -0.942  -0.852  -0.788  -0.949  -0.861  -0.812
75    P         1.892   1.950   2.033   1.874   1.957   2.098   2.091   2.176   2.326
76    F        -0.317  -0.315  -0.309  -0.462  -0.478  -0.472  -0.481  -0.481  -0.454
77    A        -0.317  -0.202  -0.268  -0.331  -0.163  -0.245  -0.481  -0.332  -0.394
78    Q        -1.012  -1.030  -0.970  -1.068  -1.094  -0.991  -0.949  -0.946  -0.856
79    A        -1.517  -1.532  -1.468  -1.284  -1.324  -1.230  -1.182  -1.175  -1.083
80    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
81    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
82    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
83    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
84    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
85    -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
86    T        -1.517  -1.458  -1.465  -1.532  -1.446  -1.458  -1.182  -1.113  -1.080
87    V        -1.517  -1.500  -1.434  -1.360  -1.313  -1.227  -1.182  -1.149  -1.052
88    F         1.892   1.950   2.033   1.886   1.970   2.110   2.091   2.176   2.326
89    L         0.502   0.554   0.586   0.236   0.329   0.348   0.220   0.300   0.319
90    Q        -1.012  -1.030  -0.970  -0.995  -1.014  -0.918  -0.949  -0.946  -0.856
91    M        -1.012  -1.012  -0.969  -0.811  -0.833  -0.744  -0.949  -0.931  -0.855
92    W         0.908   0.732   0.724   1.296   1.062   1.048   0.922   0.619   0.578
93    Q        -1.012  -1.030  -0.970  -1.125  -1.116  -1.044  -0.949  -0.946  -0.856
94    N        -0.822  -0.643  -0.815  -0.816  -0.533  -0.822  -0.715  -0.489  -0.680
95    Q        -1.517  -1.513  -1.466  -1.379  -1.351  -1.289  -1.182  -1.160  -1.080
96    V         0.664   0.517   0.587   0.529   0.263   0.374   0.513   0.231   0.321
97    V        -0.317  -0.414  -0.324  -0.430  -0.558  -0.413  -0.481  -0.585  -0.470
98    Q        -0.317  -0.384  -0.289  -0.508  -0.586  -0.451  -0.481  -0.543  -0.423
99    T        -0.003  -0.137  -0.197   0.103  -0.137  -0.231  -0.013  -0.205  -0.286
100   Q        -0.822  -0.915  -0.937  -0.776  -0.934  -0.974  -0.715  -0.814  -0.819
101   H         1.892   1.950   2.033   2.102   2.185   2.327   2.091   2.176   2.326
102   A        -1.517  -1.458  -1.465  -1.442  -1.363  -1.362  -1.182  -1.113  -1.080
103   L        -0.317  -0.383  -0.286  -0.457  -0.496  -0.372  -0.481  -0.541  -0.418
104   T        -0.822  -0.891  -0.884  -0.745  -0.886  -0.885  -0.715  -0.789  -0.760
105   G        -0.508  -0.460  -0.360  -0.682  -0.628  -0.454  -0.715  -0.645  -0.514
106   V        -1.012  -0.925  -0.934  -1.024  -0.882  -0.880  -0.949  -0.835  -0.819
107   D         1.892   1.950   2.033   1.874   1.964   2.098   2.091   2.176   2.326
108   Y        -1.517  -1.515  -1.465  -1.232  -1.203  -1.132  -1.182  -1.162  -1.080
109   H         1.892   1.950   2.033   2.102   2.185   2.327   2.091   2.176   2.326
110   A        -1.012  -1.014  -0.968  -1.084  -1.091  -0.986  -0.949  -0.933  -0.854
111   I         0.908   0.732   0.724   0.914   0.664   0.631   0.922   0.619   0.578
112   P         0.908   0.732   0.724   0.946   0.675   0.647   0.922   0.619   0.578
113   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
114   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
115   G         0.799   0.856   0.688   0.900   0.988   0.739   0.744   0.830   0.511
116   S         0.422   0.486   0.547   0.192   0.300   0.375   0.071   0.172   0.245
117   G         0.908   1.011   0.774   0.970   1.114   0.759   0.922   1.081   0.668
118   T         0.908   0.732   0.724   1.018   0.745   0.747   0.922   0.619   0.578
119   L        -1.012  -1.030  -0.970  -1.095  -1.110  -1.020  -0.949  -0.946  -0.856
120   I        -0.317  -0.202  -0.268  -0.517  -0.337  -0.440  -0.481  -0.332  -0.394
121   C        -0.317  -0.308  -0.308  -0.212  -0.242  -0.261  -0.481  -0.474  -0.452
122   N         0.908   0.972   0.779   0.887   0.994   0.741   0.922   1.019   0.677
123   V        -0.317  -0.308  -0.308  -0.389  -0.377  -0.346  -0.481  -0.474  -0.452
124   N        -0.317  -0.414  -0.324  -0.582  -0.712  -0.579  -0.481  -0.585  -0.470
125   C        -0.317  -0.308  -0.308  -0.125  -0.160  -0.142  -0.481  -0.474  -0.452
126   K         0.908   0.732   0.724   1.080   0.848   0.826   0.922   0.619   0.578
127   V         1.892   1.950   2.033   1.820   1.907   2.043   2.091   2.176   2.326
128   R         0.908   0.960   0.784   1.117   1.187   0.952   0.922   0.999   0.687
129   F         0.908   0.732   0.724   1.028   0.791   0.793   0.922   0.619   0.578
130   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
131   D         0.908   0.732   0.724   0.946   0.681   0.647   0.922   0.619   0.578
132   E         0.908   0.972   0.779   1.161   1.255   0.967   0.922   1.019   0.677
133   S         0.908   0.732   0.724   0.897   0.655   0.651   0.922   0.619   0.578
134   G         1.892   1.950   2.033   1.898   1.977   2.122   2.091   2.176   2.326
135   R         0.502   0.485   0.536   0.492   0.441   0.511   0.220   0.169   0.223
136   D         0.502   0.554   0.586   0.275   0.363   0.379   0.220   0.300   0.319
137   K        -0.317  -0.414  -0.324  -0.279  -0.426  -0.289  -0.481  -0.585  -0.470
138   M        -1.012  -1.012  -0.969  -0.914  -0.886  -0.837  -0.949  -0.931  -0.855
139   G         1.892   1.950   2.033   1.898   1.977   2.122   2.091   2.176   2.326
140   Q        -0.317  -0.414  -0.324  -0.344  -0.482  -0.335  -0.481  -0.585  -0.470
141   D        -0.317  -0.315  -0.309  -0.467  -0.500  -0.468  -0.481  -0.481  -0.454
142   A        -0.317  -0.395  -0.288  -0.430  -0.543  -0.365  -0.481  -0.558  -0.426
143   T        -0.317  -0.237  -0.279  -0.401  -0.297  -0.341  -0.481  -0.372  -0.408
144   V        -1.012  -1.030  -0.970  -1.149  -1.161  -1.073  -0.949  -0.946  -0.856
145   P        -0.822  -0.915  -0.937  -0.659  -0.786  -0.830  -0.715  -0.814  -0.819
146   I        -2.022  -1.959  -1.888  -1.655  -1.592  -1.453  -1.416  -1.342  -1.243
147   Q        -2.022  -1.959  -1.888  -1.774  -1.657  -1.573  -1.416  -1.342  -1.243
148   P        -0.822  -0.704  -0.858  -0.804  -0.613  -0.899  -0.715  -0.561  -0.730
149   N        -0.822  -0.827  -0.882  -0.889  -0.897  -1.002  -0.715  -0.721  -0.757
150   N        -1.018  -0.982  -0.939  -1.171  -1.127  -1.054  -0.939  -0.883  -0.820
151   T        -1.018  -0.958  -0.936  -0.946  -0.850  -0.842  -0.939  -0.857  -0.817
152   G        -1.136  -1.108  -1.001  -1.243  -1.197  -1.039  -1.065  -1.017  -0.886
153   N        -0.379  -0.349  -0.302  -0.641  -0.600  -0.540  -0.539  -0.492  -0.434
154   R         0.378   0.421   0.516   0.254   0.316   0.467  -0.013   0.049   0.185
155   N        -1.136  -1.108  -1.001  -1.263  -1.218  -1.058  -1.065  -1.017  -0.886
156   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
157   P        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
158   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
159   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
160   M        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
161   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
162   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
163   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
164   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
165   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
166   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
167   K        -0.412  -0.445  -0.321  -0.505  -0.518  -0.357  -0.603  -0.625  -0.465
168   P        -1.018  -1.052  -0.977  -1.086  -1.158  -1.053  -0.939  -0.964  -0.861
169   R         0.908   0.732   0.724   1.092   0.818   0.804   0.922   0.619   0.578
170   P         1.892   1.950   2.033   1.874   1.957   2.098   2.091   2.176   2.326
171   L        -1.012  -1.054  -0.946  -1.155  -1.199  -1.045  -0.949  -0.968  -0.832
172   W         0.908   0.732   0.724   1.235   0.969   0.932   0.922   0.619   0.578
173   G         0.908   0.732   0.724   1.022   0.770   0.770   0.922   0.619   0.578
174   P        -0.003   0.214  -0.125   0.010   0.312  -0.167  -0.013   0.293  -0.184
175   Y        -0.317  -0.414  -0.324  -0.098  -0.254  -0.118  -0.481  -0.585  -0.470
176   F        -0.003  -0.066  -0.182   0.175   0.049  -0.070  -0.013  -0.116  -0.266
177   G         0.908   0.732   0.724   0.976   0.700   0.682   0.922   0.619   0.578
178   I        -0.003   0.125  -0.111   0.039   0.225  -0.127  -0.013   0.169  -0.164
179   S        -0.822  -0.915  -0.937  -0.854  -1.008  -1.058  -0.715  -0.814  -0.819
180   L        -0.003  -0.137  -0.197  -0.008  -0.212  -0.324  -0.013  -0.205  -0.286
181   Q        -0.317  -0.414  -0.324  -0.474  -0.575  -0.451  -0.481  -0.585  -0.470
182   L         1.892   1.950   2.033   1.790   1.891   2.013   2.091   2.176   2.326
183   I        -0.317  -0.213  -0.250  -0.408  -0.248  -0.279  -0.481  -0.333  -0.376
184   I        -0.412  -0.343  -0.344  -0.720  -0.614  -0.619  -0.603  -0.509  -0.495
185   D         0.799   0.907   0.692   0.879   1.036   0.736   0.744   0.914   0.519
186   D         0.422   0.437   0.524   0.313   0.335   0.475   0.071   0.078   0.200
187   R        -0.183  -0.236  -0.301  -0.098  -0.201  -0.374  -0.266  -0.334  -0.433
188   I         0.799   0.786   0.680   0.732   0.712   0.528   0.744   0.712   0.497
189   F        -0.183  -0.236  -0.301  -0.115  -0.196  -0.311  -0.266  -0.334  -0.433
190   R        -1.018  -1.014  -0.974  -0.937  -0.948  -0.912  -0.939  -0.918  -0.858
191   N         0.799   0.786   0.680   0.689   0.674   0.498   0.744   0.712   0.497
192   D         0.664   0.544   0.587   0.616   0.408   0.455   0.513   0.280   0.321
193   F        -1.136  -1.069  -1.001  -1.186  -1.048  -0.982  -1.065  -0.976  -0.886
194   N        -0.183  -0.236  -0.301  -0.324  -0.414  -0.534  -0.266  -0.334  -0.433
195   G         0.422   0.437   0.524   0.342   0.360   0.502   0.071   0.078   0.200
196   V        -0.183  -0.236  -0.301  -0.192  -0.270  -0.385  -0.266  -0.334  -0.433
197   I         1.892   1.950   2.033   1.797   1.884   2.020   2.091   2.176   2.326
198   S        -0.412  -0.365  -0.346  -0.723  -0.654  -0.599  -0.603  -0.531  -0.497
199   G         0.908   1.054   0.783   0.875   1.076   0.705   0.922   1.148   0.684
200   F        -1.012  -0.947  -0.925  -0.840  -0.756  -0.702  -0.949  -0.861  -0.812
201   N        -0.003  -0.137  -0.197  -0.056  -0.265  -0.369  -0.013  -0.205  -0.286
202   Y         1.892   1.950   2.033   2.091   2.180   2.316   2.091   2.176   2.326
203   N        -0.822  -0.603  -0.869  -0.597  -0.271  -0.695  -0.715  -0.440  -0.743
204   M        -0.317  -0.206  -0.268  -0.392  -0.240  -0.283  -0.481  -0.337  -0.393
205   V         0.502   0.554   0.586   0.306   0.376   0.424   0.220   0.300   0.319
206   Y        -0.003  -0.066  -0.182   0.367   0.271   0.102  -0.013  -0.116  -0.266
207   K        -0.003  -0.137  -0.197   0.200   0.009  -0.101  -0.013  -0.205  -0.286
208   P         1.892   1.950   2.033   1.874   1.957   2.098   2.091   2.176   2.326
209   E        -0.822  -0.704  -0.858  -0.601  -0.408  -0.705  -0.715  -0.561  -0.730
210   D         1.892   1.950   2.033   1.874   1.964   2.098   2.091   2.176   2.326
211   S         1.892   1.950   2.033   1.772   1.860   1.995   2.091   2.176   2.326
212   L        -0.822  -0.915  -0.937  -0.843  -0.992  -1.052  -0.715  -0.814  -0.819
213   L        -0.822  -0.799  -0.880  -0.734  -0.725  -0.824  -0.715  -0.690  -0.755
214   K        -0.822  -0.860  -0.874  -0.623  -0.660  -0.717  -0.715  -0.757  -0.748
215   I        -0.003  -0.137  -0.197   0.095  -0.077  -0.182  -0.013  -0.205  -0.286
216   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
217   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/P34232
Output conservation file - output/P34232
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
