1     M         1.201   1.208   1.291   1.375   1.385   1.502   1.264   1.274   1.388
2     P        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
3     L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
4     N        -0.401  -0.454  -0.438  -0.389  -0.474  -0.466  -0.555  -0.629  -0.603
5     K        -0.505  -0.500  -0.454  -0.627  -0.625  -0.563  -0.721  -0.721  -0.628
6     S        -1.431  -1.439  -1.302  -1.331  -1.341  -1.118  -1.262  -1.265  -1.071
7     N        -1.041  -1.030  -0.931  -1.048  -1.034  -0.854  -1.082  -1.065  -0.905
8     I        -0.916  -0.973  -0.910  -0.865  -0.939  -0.833  -0.969  -1.014  -0.886
9     R         0.565   0.615   0.268   0.709   0.764   0.269   0.554   0.626   0.031
10    E         1.201   1.208   1.291   1.098   1.107   1.240   1.264   1.274   1.388
11    Y         1.201   1.208   1.291   1.281   1.292   1.413   1.264   1.274   1.388
12    K         1.201   1.208   1.291   1.182   1.196   1.320   1.264   1.274   1.388
13    L         0.565   0.498   0.261   0.624   0.538   0.157   0.554   0.450   0.018
14    V         1.201   1.208   1.291   1.102   1.111   1.244   1.264   1.274   1.388
15    V         1.201   1.208   1.291   1.102   1.111   1.244   1.264   1.274   1.388
16    V         1.201   1.208   1.291   1.102   1.111   1.244   1.264   1.274   1.388
17    G         1.201   1.208   1.291   1.112   1.124   1.253   1.264   1.274   1.388
18    G         0.565   0.586   0.260   0.578   0.605   0.149   0.554   0.583   0.016
19    G         1.201   1.208   1.291   1.112   1.124   1.253   1.264   1.274   1.388
20    G         1.201   1.208   1.291   1.112   1.124   1.253   1.264   1.274   1.388
21    V         1.201   1.208   1.291   1.102   1.111   1.244   1.264   1.274   1.388
22    G         1.201   1.208   1.291   1.112   1.124   1.253   1.264   1.274   1.388
23    K         1.201   1.208   1.291   1.182   1.196   1.320   1.264   1.274   1.388
24    S         1.201   1.208   1.291   1.062   1.078   1.206   1.264   1.274   1.388
25    A         0.565   0.523   0.258   0.665   0.621   0.278   0.554   0.488   0.012
26    L         0.565   0.498   0.261   0.645   0.565   0.223   0.554   0.450   0.018
27    T         1.201   1.208   1.291   1.230   1.244   1.365   1.264   1.274   1.388
28    I         0.565   0.498   0.261   0.714   0.629   0.258   0.554   0.450   0.018
29    Q         1.201   1.208   1.291   1.128   1.143   1.269   1.264   1.274   1.388
30    L         0.565   0.498   0.261   0.658   0.580   0.260   0.554   0.450   0.018
31    T        -0.317  -0.320  -0.441  -0.248  -0.274  -0.466  -0.462  -0.476  -0.611
32    Q         0.565   0.582   0.267   0.628   0.651   0.273   0.554   0.577   0.028
33    S         0.565   0.523   0.258   0.514   0.465   0.058   0.554   0.488   0.012
34    H         1.201   1.208   1.291   1.434   1.445   1.558   1.264   1.274   1.388
35    F         1.201   1.208   1.291   1.339   1.349   1.468   1.264   1.274   1.388
36    V         0.565   0.523   0.258   0.563   0.508   0.121   0.554   0.488   0.012
37    D         1.201   1.208   1.291   1.210   1.219   1.346   1.264   1.274   1.388
38    E         1.201   1.208   1.291   1.098   1.107   1.240   1.264   1.274   1.388
39    Y         1.201   1.208   1.291   1.281   1.292   1.413   1.264   1.274   1.388
40    D         1.201   1.208   1.291   1.210   1.219   1.346   1.264   1.274   1.388
41    P         1.201   1.208   1.291   1.404   1.415   1.529   1.264   1.274   1.388
42    T         1.201   1.208   1.291   1.230   1.244   1.365   1.264   1.274   1.388
43    I         1.201   1.208   1.291   1.253   1.263   1.387   1.264   1.274   1.388
44    E         1.201   1.208   1.291   1.098   1.107   1.240   1.264   1.274   1.388
45    D         0.565   0.615   0.268   0.671   0.731   0.235   0.554   0.626   0.031
46    S         1.201   1.208   1.291   1.062   1.078   1.206   1.264   1.274   1.388
47    Y         1.201   1.208   1.291   1.281   1.292   1.413   1.264   1.274   1.388
48    R         1.201   1.208   1.291   1.246   1.252   1.380   1.264   1.274   1.388
49    K         1.201   1.208   1.291   1.182   1.196   1.320   1.264   1.274   1.388
50    Q        -0.040  -0.088  -0.406   0.046  -0.020  -0.507  -0.055  -0.123  -0.559
51    V        -0.844  -0.844  -0.913  -0.606  -0.605  -0.755  -0.868  -0.862  -0.887
52    V        -0.916  -0.938  -0.911  -0.933  -0.958  -0.902  -0.969  -0.983  -0.887
53    I         0.565   0.615   0.268   0.714   0.774   0.271   0.554   0.626   0.031
54    D         1.201   1.208   1.291   1.210   1.219   1.346   1.264   1.274   1.388
55    D        -0.844  -0.902  -0.881  -0.769  -0.844  -0.822  -0.868  -0.920  -0.854
56    E        -0.844  -0.862  -0.909  -0.864  -0.886  -0.951  -0.868  -0.878  -0.883
57    V        -0.844  -0.833  -0.906  -0.880  -0.875  -0.976  -0.868  -0.857  -0.880
58    S        -1.137  -1.121  -0.953  -1.298  -1.265  -1.016  -1.172  -1.152  -0.926
59    I        -0.442  -0.473  -0.447  -0.477  -0.509  -0.445  -0.665  -0.687  -0.621
60    L         1.201   1.208   1.291   1.173   1.185   1.311   1.264   1.274   1.388
61    D         1.201   1.208   1.291   1.210   1.219   1.346   1.264   1.274   1.388
62    I         0.085   0.080   0.172  -0.062  -0.086   0.036  -0.258  -0.272  -0.149
63    L         1.201   1.208   1.291   1.173   1.185   1.311   1.264   1.274   1.388
64    D         1.201   1.208   1.291   1.210   1.219   1.346   1.264   1.274   1.388
65    T         1.201   1.208   1.291   1.230   1.244   1.365   1.264   1.274   1.388
66    A         1.201   1.208   1.291   1.173   1.188   1.311   1.264   1.274   1.388
67    G         1.201   1.208   1.291   1.112   1.124   1.253   1.264   1.274   1.388
68    Q         1.201   1.208   1.291   1.128   1.143   1.269   1.264   1.274   1.388
69    E         1.201   1.208   1.291   1.098   1.107   1.240   1.264   1.274   1.388
70    E         1.201   1.208   1.291   1.098   1.107   1.240   1.264   1.274   1.388
71    Y         1.201   1.208   1.291   1.281   1.292   1.413   1.264   1.274   1.388
72    S         1.201   1.208   1.291   1.062   1.078   1.206   1.264   1.274   1.388
73    A         1.201   1.208   1.291   1.173   1.188   1.311   1.264   1.274   1.388
74    M         1.201   1.208   1.291   1.375   1.385   1.502   1.264   1.274   1.388
75    R         1.201   1.208   1.291   1.246   1.252   1.380   1.264   1.274   1.388
76    E         1.201   1.208   1.291   1.098   1.107   1.240   1.264   1.274   1.388
77    Q         1.201   1.208   1.291   1.128   1.143   1.269   1.264   1.274   1.388
78    Y         1.201   1.208   1.291   1.281   1.292   1.413   1.264   1.274   1.388
79    M         1.201   1.208   1.291   1.375   1.385   1.502   1.264   1.274   1.388
80    R         1.201   1.208   1.291   1.246   1.252   1.380   1.264   1.274   1.388
81    N         0.253   0.231   0.183   0.253   0.218   0.090   0.046   0.004  -0.128
82    G         1.201   1.208   1.291   1.112   1.124   1.253   1.264   1.274   1.388
83    E         0.565   0.498   0.261   0.564   0.479   0.139   0.554   0.450   0.018
84    G         1.201   1.208   1.291   1.112   1.124   1.253   1.264   1.274   1.388
85    F         1.201   1.208   1.291   1.339   1.349   1.468   1.264   1.274   1.388
86    L         1.201   1.208   1.291   1.173   1.185   1.311   1.264   1.274   1.388
87    L         1.201   1.208   1.291   1.173   1.185   1.311   1.264   1.274   1.388
88    V         1.201   1.208   1.291   1.102   1.111   1.244   1.264   1.274   1.388
89    Y         0.565   0.523   0.258   0.765   0.716   0.347   0.554   0.488   0.012
90    S        -0.040  -0.066  -0.370  -0.009  -0.039  -0.474  -0.055  -0.092  -0.510
91    I         0.253   0.292   0.193   0.252   0.310   0.088   0.046   0.111  -0.109
92    T         0.085   0.093   0.176  -0.044  -0.030   0.075  -0.258  -0.247  -0.141
93    S         1.201   1.208   1.291   1.062   1.078   1.206   1.264   1.274   1.388
94    K        -0.317  -0.268  -0.434  -0.236  -0.165  -0.433  -0.462  -0.388  -0.600
95    S        -1.319  -1.363  -1.274  -1.251  -1.316  -1.197  -1.172  -1.204  -1.049
96    S         1.201   1.208   1.291   1.062   1.078   1.206   1.264   1.274   1.388
97    L         0.253   0.299   0.191   0.356   0.426   0.189   0.046   0.124  -0.114
98    D        -0.317  -0.284  -0.441  -0.375  -0.330  -0.560  -0.462  -0.413  -0.611
99    E         1.201   1.208   1.291   1.098   1.107   1.240   1.264   1.274   1.388
100   L        -0.317  -0.386  -0.413  -0.278  -0.377  -0.419  -0.462  -0.550  -0.573
101   M        -1.721  -1.714  -1.590  -1.463  -1.465  -1.293  -1.375  -1.362  -1.171
102   T        -0.844  -0.904  -0.907  -0.768  -0.842  -0.869  -0.868  -0.922  -0.881
103   Y         0.032   0.042   0.169  -0.003   0.008   0.201  -0.360  -0.346  -0.154
104   Y         0.565   0.523   0.258   0.735   0.683   0.257   0.554   0.488   0.012
105   Q        -0.609  -0.620  -0.882  -0.472  -0.488  -0.888  -0.563  -0.577  -0.852
106   Q         1.201   1.208   1.291   1.128   1.143   1.269   1.264   1.274   1.388
107   I         1.201   1.208   1.291   1.253   1.263   1.387   1.264   1.274   1.388
108   L         0.253   0.290   0.191   0.181   0.241   0.032   0.046   0.108  -0.113
109   R         1.201   1.208   1.291   1.246   1.252   1.380   1.264   1.274   1.388
110   V         1.201   1.208   1.291   1.102   1.111   1.244   1.264   1.274   1.388
111   K         1.201   1.208   1.291   1.182   1.196   1.320   1.264   1.274   1.388
112   D         1.201   1.208   1.291   1.210   1.219   1.346   1.264   1.274   1.388
113   T        -1.319  -1.327  -1.275  -1.323  -1.343  -1.220  -1.172  -1.178  -1.050
114   D        -0.040  -0.092  -0.403   0.126   0.053  -0.440  -0.055  -0.128  -0.556
115   Y        -1.611  -1.632  -1.575  -1.244  -1.293  -1.225  -1.274  -1.289  -1.159
116   V        -0.844  -0.893  -0.896  -0.758  -0.830  -0.798  -0.868  -0.920  -0.870
117   P         1.201   1.208   1.291   1.404   1.415   1.529   1.264   1.274   1.388
118   I        -0.040  -0.056  -0.403   0.079   0.056  -0.374  -0.055  -0.079  -0.556
119   V        -0.844  -0.820  -0.907  -0.797  -0.768  -0.833  -0.868  -0.834  -0.881
120   V        -0.317  -0.378  -0.413  -0.361  -0.455  -0.484  -0.462  -0.544  -0.573
121   V         0.565   0.618   0.268   0.575   0.634   0.173   0.554   0.630   0.030
122   G        -0.040  -0.088  -0.406   0.022  -0.046  -0.540  -0.055  -0.123  -0.559
123   N         1.201   1.208   1.291   1.177   1.194   1.315   1.264   1.274   1.388
124   K         1.201   1.208   1.291   1.182   1.196   1.320   1.264   1.274   1.388
125   S        -0.442  -0.456  -0.447  -0.402  -0.402  -0.405  -0.665  -0.669  -0.621
126   D         1.201   1.208   1.291   1.210   1.219   1.346   1.264   1.274   1.388
127   L         1.201   1.208   1.291   1.173   1.185   1.311   1.264   1.274   1.388
128   E        -0.040  -0.145  -0.398   0.020  -0.125  -0.506  -0.055  -0.199  -0.549
129   N        -2.013  -1.970  -1.850  -1.678  -1.629  -1.446  -1.477  -1.439  -1.252
130   E         0.565   0.498   0.261   0.564   0.479   0.139   0.554   0.450   0.018
131   K         0.565   0.597   0.267   0.709   0.742   0.266   0.554   0.599   0.028
132   Q         0.253   0.239   0.213   0.130   0.105   0.026   0.046   0.019  -0.072
133   V         1.201   1.208   1.291   1.102   1.111   1.244   1.264   1.274   1.388
134   S         1.201   1.208   1.291   1.062   1.078   1.206   1.264   1.274   1.388
135   Y        -1.137  -1.198  -1.252  -0.770  -0.871  -0.959  -0.969  -1.031  -1.027
136   Q        -0.916  -0.937  -0.901  -1.033  -1.063  -0.984  -0.969  -0.982  -0.877
137   D         0.253   0.279   0.185   0.135   0.171   0.009   0.046   0.090  -0.125
138   G         1.201   1.208   1.291   1.112   1.124   1.253   1.264   1.274   1.388
139   L        -0.916  -0.891  -0.899  -0.978  -0.945  -0.933  -0.969  -0.939  -0.875
140   N        -1.721  -1.702  -1.588  -1.633  -1.600  -1.424  -1.375  -1.355  -1.170
141   M         0.565   0.597   0.267   0.663   0.701   0.285   0.554   0.599   0.028
142   A         1.201   1.208   1.291   1.173   1.188   1.311   1.264   1.274   1.388
143   K        -0.609  -0.695  -0.891  -0.397  -0.514  -0.815  -0.563  -0.665  -0.862
144   Q        -0.624  -0.634  -0.485  -0.934  -0.954  -0.716  -0.868  -0.877  -0.666
145   M        -0.844  -0.868  -0.913  -0.490  -0.515  -0.568  -0.868  -0.886  -0.887
146   N        -0.609  -0.594  -0.860  -0.369  -0.352  -0.706  -0.563  -0.545  -0.827
147   A        -0.916  -0.973  -0.910  -0.772  -0.848  -0.765  -0.969  -1.014  -0.886
148   P        -0.040  -0.066  -0.370   0.331   0.295  -0.188  -0.055  -0.092  -0.510
149   F         0.253   0.239   0.213   0.390   0.364   0.290   0.046   0.019  -0.072
150   L        -0.609  -0.692  -0.854  -0.386  -0.494  -0.727  -0.563  -0.661  -0.821
151   E         1.201   1.208   1.291   1.098   1.107   1.240   1.264   1.274   1.388
152   T         1.201   1.208   1.291   1.230   1.244   1.365   1.264   1.274   1.388
153   S         1.201   1.208   1.291   1.062   1.078   1.206   1.264   1.274   1.388
154   A         1.201   1.208   1.291   1.173   1.188   1.311   1.264   1.274   1.388
155   K         0.565   0.498   0.261   0.654   0.574   0.228   0.554   0.450   0.018
156   Q        -0.609  -0.692  -0.854  -0.432  -0.539  -0.766  -0.563  -0.661  -0.821
157   A        -0.844  -0.827  -0.913  -0.732  -0.711  -0.861  -0.868  -0.843  -0.888
158   I        -0.609  -0.692  -0.854  -0.304  -0.420  -0.658  -0.563  -0.661  -0.821
159   N         1.201   1.208   1.291   1.177   1.194   1.315   1.264   1.274   1.388
160   V         1.201   1.208   1.291   1.102   1.111   1.244   1.264   1.274   1.388
161   E         0.565   0.498   0.261   0.564   0.479   0.139   0.554   0.450   0.018
162   E        -0.040  -0.070  -0.406   0.033  -0.009  -0.486  -0.055  -0.097  -0.559
163   A        -0.040  -0.059  -0.402   0.122   0.107  -0.382  -0.055  -0.085  -0.554
164   F         1.201   1.208   1.291   1.339   1.349   1.468   1.264   1.274   1.388
165   Y         0.565   0.498   0.261   0.772   0.696   0.374   0.554   0.450   0.018
166   T        -1.026  -1.022  -0.929  -1.098  -1.096  -0.948  -1.071  -1.066  -0.904
167   L         1.201   1.208   1.291   1.173   1.185   1.311   1.264   1.274   1.388
168   A         0.565   0.597   0.267   0.563   0.599   0.137   0.554   0.599   0.028
169   R         1.201   1.208   1.291   1.246   1.252   1.380   1.264   1.274   1.388
170   L        -1.319  -1.293  -1.274  -1.285  -1.268  -1.225  -1.172  -1.152  -1.049
171   V         0.253   0.279   0.190   0.252   0.290   0.080   0.046   0.090  -0.115
172   R         0.565   0.582   0.264   0.708   0.724   0.259   0.554   0.577   0.023
173   D        -0.844  -0.885  -0.895  -0.731  -0.801  -0.813  -0.868  -0.914  -0.868
174   E        -0.401  -0.374  -0.443  -0.491  -0.463  -0.580  -0.555  -0.516  -0.609
175   G        -0.401  -0.486  -0.438  -0.508  -0.652  -0.579  -0.555  -0.676  -0.603
176   G        -0.578  -0.568  -0.468  -0.798  -0.779  -0.624  -0.815  -0.799  -0.646
177   K         0.066   0.094   0.173  -0.192  -0.142  -0.040  -0.295  -0.246  -0.147
178   Y        -0.745  -0.742  -0.888  -0.470  -0.481  -0.705  -0.725  -0.724  -0.858
179   N        -0.262  -0.238  -0.415  -0.274  -0.241  -0.559  -0.360  -0.330  -0.572
180   K        -0.894  -0.891  -0.915  -0.875  -0.871  -0.958  -0.901  -0.897  -0.887
181   T        -1.041  -1.021  -0.932  -1.110  -1.071  -0.924  -1.082  -1.056  -0.906
182   L        -1.431  -1.420  -1.297  -1.412  -1.397  -1.235  -1.262  -1.248  -1.066
183   T        -0.578  -0.541  -0.467  -0.729  -0.682  -0.553  -0.815  -0.770  -0.644
184   E        -0.578  -0.536  -0.466  -0.692  -0.640  -0.508  -0.815  -0.765  -0.643
185   N        -1.045  -1.039  -0.931  -1.105  -1.097  -0.949  -1.075  -1.066  -0.904
186   D        -1.045  -1.074  -0.939  -1.012  -1.060  -0.871  -1.075  -1.104  -0.912
187   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
188   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
189   N        -1.045  -1.053  -0.933  -1.155  -1.181  -0.996  -1.075  -1.082  -0.906
190   S        -1.513  -1.491  -1.315  -1.667  -1.635  -1.370  -1.335  -1.311  -1.081
191   K        -0.401  -0.407  -0.448  -0.444  -0.457  -0.573  -0.555  -0.563  -0.616
192   Q        -0.401  -0.335  -0.441  -0.491  -0.400  -0.556  -0.555  -0.462  -0.607
193   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
194   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
195   Q        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
196   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
197   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
198   K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
199   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
200   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
201   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
202   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
203   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
204   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
205   V        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
206   P        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
207   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
208   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
209   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
210   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
211   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
212   H        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
213   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
214   K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
215   M        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
216   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
217   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
218   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
219   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
220   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
221   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
222   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
223   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
224   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
225   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
226   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
227   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
228   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
229   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
230   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
231   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
232   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
233   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
234   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
235   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
236   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
237   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
238   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
239   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
240   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
241   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
242   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
243   S        -1.820  -1.794  -1.610  -1.710  -1.639  -1.411  -1.443  -1.417  -1.184
244   N        -1.041  -1.016  -0.929  -1.050  -1.018  -0.858  -1.082  -1.050  -0.903
245   A        -1.041  -1.016  -0.929  -0.935  -0.893  -0.759  -1.082  -1.050  -0.903
246   A        -0.262  -0.240  -0.412  -0.245  -0.216  -0.499  -0.360  -0.330  -0.568
247   N        -0.894  -0.924  -0.901  -0.844  -0.892  -0.863  -0.901  -0.938  -0.872
248   G        -1.431  -1.432  -1.296  -1.379  -1.351  -1.173  -1.262  -1.261  -1.065
249   K        -0.505  -0.495  -0.453  -0.577  -0.569  -0.487  -0.721  -0.712  -0.627
250   N         0.128   0.116   0.184  -0.093  -0.117  -0.036  -0.180  -0.206  -0.126
251   V        -1.431  -1.432  -1.298  -1.430  -1.449  -1.253  -1.262  -1.260  -1.068
252   N        -1.431  -1.393  -1.294  -1.403  -1.350  -1.180  -1.262  -1.223  -1.064
253   S        -0.894  -0.806  -0.896  -0.985  -0.853  -0.988  -0.901  -0.797  -0.866
254   S        -0.505  -0.443  -0.451  -0.755  -0.660  -0.662  -0.721  -0.638  -0.624
255   T        -1.041  -1.071  -0.937  -1.093  -1.157  -0.938  -1.082  -1.105  -0.911
256   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
257   V        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
258   V        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
259   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
260   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
261   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
262   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
263   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
264   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
265   I        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
266   E        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
267   S        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
268   K        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
269   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
270   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
271   L        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
272   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
273   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
274   N         0.357   0.359   0.261   0.287   0.287   0.124   0.225   0.226   0.018
275   Q        -0.505  -0.469  -0.466  -0.730  -0.667  -0.658  -0.721  -0.665  -0.643
276   A         0.441   0.473   0.236   0.385   0.428   0.061   0.362   0.411  -0.029
277   T        -0.262  -0.222  -0.425  -0.183  -0.121  -0.500  -0.360  -0.306  -0.586
278   N        -1.041  -0.980  -0.931  -1.178  -1.095  -0.996  -1.082  -1.019  -0.905
279   G        -0.262  -0.349  -0.409  -0.269  -0.389  -0.488  -0.360  -0.483  -0.564
280   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
281   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
282   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
283   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
284   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
285   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
286   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
287   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
288   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
289   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
290   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
291   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
292   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
293   K        -1.045  -1.063  -0.939  -0.989  -1.015  -0.837  -1.075  -1.090  -0.912
294   T        -0.578  -0.575  -0.474  -0.661  -0.657  -0.473  -0.815  -0.807  -0.653
295   Q        -0.401  -0.406  -0.435  -0.476  -0.487  -0.544  -0.555  -0.561  -0.599
296   T        -0.401  -0.434  -0.441  -0.360  -0.414  -0.461  -0.555  -0.600  -0.607
297   D        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
298   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
299   T        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
300   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
301   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
302   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
303   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
304   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
305   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
306   N         0.066   0.064   0.179  -0.159  -0.168   0.017  -0.295  -0.303  -0.136
307   I        -1.513  -1.497  -1.315  -1.472  -1.456  -1.185  -1.335  -1.315  -1.081
308   D        -1.045  -1.002  -0.926  -1.179  -1.111  -1.008  -1.075  -1.024  -0.899
309   N        -1.045  -1.052  -0.936  -1.216  -1.238  -1.082  -1.075  -1.079  -0.909
310   S        -0.401  -0.424  -0.438  -0.580  -0.619  -0.651  -0.555  -0.586  -0.603
311   T        -1.041  -1.038  -0.932  -1.141  -1.134  -0.997  -1.082  -1.073  -0.906
312   G         0.441   0.376   0.271   0.407   0.320   0.141   0.362   0.255   0.036
313   Q        -0.505  -0.515  -0.453  -0.685  -0.713  -0.612  -0.721  -0.735  -0.626
314   A        -1.041  -1.064  -0.937  -1.237  -1.274  -1.071  -1.082  -1.098  -0.911
315   G        -1.820  -1.800  -1.610  -1.690  -1.641  -1.392  -1.443  -1.421  -1.184
316   Q        -1.431  -1.372  -1.298  -1.428  -1.341  -1.244  -1.262  -1.203  -1.067
317   A        -0.894  -0.926  -0.910  -0.978  -1.043  -1.039  -0.901  -0.937  -0.882
318   N        -0.894  -0.920  -0.909  -0.856  -0.898  -0.891  -0.901  -0.931  -0.880
319   A        -0.952  -0.905  -0.915  -1.031  -0.954  -0.988  -0.990  -0.935  -0.890
320   Q        -1.286  -1.313  -1.275  -1.212  -1.258  -1.211  -1.122  -1.146  -1.048
321   S        -0.952  -0.964  -0.916  -0.956  -0.970  -0.839  -0.990  -1.002  -0.891
322   A        -0.411  -0.393  -0.453  -0.449  -0.421  -0.501  -0.592  -0.567  -0.626
323   N        -1.412  -1.410  -1.290  -1.516  -1.516  -1.336  -1.255  -1.247  -1.062
324   T        -1.412  -1.356  -1.289  -1.364  -1.293  -1.156  -1.255  -1.203  -1.061
325   V        -0.952  -0.919  -0.917  -1.100  -1.040  -1.053  -0.990  -0.946  -0.891
326   N        -0.411  -0.451  -0.446  -0.514  -0.560  -0.582  -0.592  -0.635  -0.617
327   N        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
328   R        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
329   V        -1.045  -1.009  -0.937  -1.049  -0.993  -0.876  -1.075  -1.033  -0.910
330   N        -1.045  -1.006  -0.930  -1.068  -1.002  -0.877  -1.075  -1.029  -0.903
331   N        -1.045  -1.072  -0.939  -1.025  -1.057  -0.867  -1.075  -1.102  -0.912
332   N        -1.820  -1.799  -1.610  -1.800  -1.769  -1.496  -1.443  -1.420  -1.184
333   S        -0.505  -0.511  -0.452  -0.772  -0.784  -0.690  -0.721  -0.729  -0.626
334   K        -1.820  -1.799  -1.610  -1.818  -1.794  -1.512  -1.443  -1.420  -1.184
335   A        -1.431  -1.440  -1.295  -1.366  -1.380  -1.156  -1.262  -1.267  -1.065
336   G        -0.894  -0.868  -0.903  -0.911  -0.880  -0.942  -0.901  -0.872  -0.875
337   Q        -1.431  -1.417  -1.292  -1.502  -1.499  -1.300  -1.262  -1.247  -1.062
338   V        -0.492  -0.440  -0.446  -0.724  -0.657  -0.643  -0.725  -0.669  -0.620
339   S        -0.952  -0.911  -0.918  -0.991  -0.929  -0.960  -0.990  -0.946  -0.893
340   N        -1.431  -1.432  -1.296  -1.390  -1.412  -1.194  -1.262  -1.261  -1.065
341   A        -1.431  -1.410  -1.297  -1.282  -1.249  -1.086  -1.262  -1.241  -1.066
342   K        -1.431  -1.402  -1.291  -1.549  -1.521  -1.350  -1.262  -1.234  -1.061
343   Q        -0.894  -0.875  -0.888  -0.936  -0.922  -0.944  -0.901  -0.883  -0.858
344   A        -1.041  -1.022  -0.928  -1.132  -1.102  -0.975  -1.082  -1.058  -0.903
345   R        -1.041  -1.048  -0.928  -1.167  -1.197  -1.009  -1.082  -1.085  -0.902
346   K        -0.505  -0.485  -0.452  -0.643  -0.606  -0.574  -0.721  -0.691  -0.626
347   Q        -1.431  -1.432  -1.296  -1.491  -1.499  -1.294  -1.262  -1.261  -1.065
348   Q         0.128   0.092   0.182  -0.113  -0.184  -0.047  -0.180  -0.250  -0.130
349   A        -1.820  -1.794  -1.610  -1.713  -1.679  -1.413  -1.443  -1.417  -1.184
350   A        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
351   P        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
352   G        -0.505  -0.486  -0.452  -0.747  -0.710  -0.653  -0.721  -0.692  -0.624
353   G        -1.431  -1.411  -1.292  -1.441  -1.405  -1.237  -1.262  -1.243  -1.062
354   N        -1.820  -1.794  -1.610  -1.725  -1.682  -1.424  -1.443  -1.417  -1.184
355   T        -1.412  -1.374  -1.291  -1.406  -1.351  -1.220  -1.255  -1.218  -1.063
356   S        -1.286  -1.287  -1.283  -1.336  -1.345  -1.349  -1.122  -1.122  -1.055
357   E        -0.411  -0.356  -0.449  -0.503  -0.409  -0.605  -0.592  -0.511  -0.621
358   A        -1.431  -1.372  -1.298  -1.437  -1.340  -1.274  -1.262  -1.203  -1.067
359   S        -1.041  -1.009  -0.929  -1.191  -1.151  -1.002  -1.082  -1.048  -0.903
360   K        -0.142  -0.160  -0.391  -0.025  -0.049  -0.415  -0.194  -0.220  -0.539
361   S         0.049   0.046   0.183  -0.320  -0.334  -0.103  -0.327  -0.338  -0.128
362   G        -0.492  -0.509  -0.449  -0.658  -0.672  -0.580  -0.725  -0.735  -0.623
363   S        -0.745  -0.789  -0.907  -0.756  -0.820  -1.003  -0.725  -0.778  -0.879
364   G        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
365   G        -0.040  -0.088  -0.406   0.042  -0.022  -0.488  -0.055  -0.123  -0.559
366   C         1.201   1.208   1.291   1.390   1.400   1.516   1.264   1.274   1.388
367   C         1.201   1.208   1.291   1.390   1.400   1.516   1.264   1.274   1.388
368   I        -0.317  -0.317  -0.438  -0.345  -0.341  -0.510  -0.462  -0.449  -0.606
369   I         0.565   0.523   0.258   0.715   0.662   0.256   0.554   0.488   0.012
370   S        -0.317  -0.264  -0.430  -0.149  -0.068  -0.398  -0.462  -0.387  -0.594
371   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
372   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
373   -        -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000  -1.000     *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - ../mafft-mac/clustal/P01120
Output conservation file - output/P01120
All 9 methods are used - true 
   1. unweighted entropy measure; 2. Henikoff entropy measure;
   3. independent count entropy measure;
   4. unweighted variance measure; 5. Henikoff variance measure;
   6. independent count variance measure;
   7. unweighted matrix-based sum-of-pairs measure;
   8. Henikoff matrix-based sum-of-pairs measure;
   9. independent count matrix-based sum-of-pairs measure;
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50
